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SECAI-Wissenschaftler:innen bei der Arbeit © DAAD/Nathan Dreessen

Veröffentlichungen in SECAI

Sophie Adama, Martin Bogdan
Computational predictive processing models of consciousness: a systematic review of non-invasive brain signal analysis in disorders of consciousness
In Frontiers in Computational Neuroscience, Frontiers Media SA, volume 20, 2026. Frontiers Media SA. 10.3389/fncom.2026.1797090
AI Methods for Health Journal Publication
Rajab Aghamov, Andrey Kudinov, Maik Thanh Nguyen, Jakob Piribauer
On Modal Logics of Full Products of Neighborhood Frames
In Proceedings of the 16th Conference on Advances in Modal Logic, AiML 2026, College Publications, 1-15, 2026. College Publications. 10.4204/EPTCS.447.1
Composite AI Conference Publication
Rajab Aghamov, Christel Baier, Toghrul Karimov, Joël Ouaknine, Jakob Piribauer
Linear dynamical systems with weight functions
In Nonlinear Analysis: Hybrid Systems, Elsevier Ltd, volume 60, 2026. Elsevier Ltd. 10.1016/j.nahs.2026.101680
Composite AI Journal Publication
Rajab Aghamov, Christel Baier, Joël Ouaknine, Jakob Piribauer, Mihir Vahanwala, Isa Vialard
Temporal Properties of Conditional Independence in Dynamic Bayesian Networks
In Proceedings of the 40th AAAI Conference on Artificial Intelligence, AAAI 2026, AAAI, 36601-36609, 2026. AAAI. 10.1609/aaai.v40i43.40983
Composite AI Conference Publication
Alessandro Pietro Aldera, Didem Cifci, Gregory P. Veldhuizen, Wan-Jung Tsai, Komala Pillay, Adam Boutall, Hermann Brenner, Michael Hoffmeister, Jakob Nikolas Kather, Raj Ramesar
Deep learning predicts microsatellite instability status in colorectal carcinoma in an ethnically heterogeneous population in South Africa
In Journal of Clinical Pathology, BMJ Publishing Group, volume 79, 50-56, 2026. BMJ Publishing Group. 10.1136/jcp-2025-210053
Intelligent Medical Devices Journal Publication
Haadia Amjad, Steffen Seitz, Kilian Göller, Carsten Knoll, Muhammad Naseer Bajwa, Ronald Tetzlaff, Muhammad Imran Malik
Block induced signature generative adversarial network (BISGAN): signature spoofing using GANs
In Neural Computing and Applications, Springer, volume 38, 2026. Springer. 10.1007/s00521-026-11916-4
AI Compute Paradigms Journal Publication
Bjoern Andres, Jannik Irmai, Lucas Fabian Naumann
Chorded cycle facets of the clique partitioning polytope
In Discrete Applied Mathematics, Elsevier B.V., volume 378, 662-670, 2026. Elsevier B.V.. 10.1016/j.dam.2025.09.020
Composite AI Journal Publication
Gustavo Araiza, Josuel Morel, Minh H. Tran, Shan Jiang, Sean Murray, Emika Miyamoto, Hannah Vogts, Kyle L. Brown, Jens Meiler, Cristina E. Martina
Glycan masking in immunogen design: computational and experimental methods
In Frontiers in Immunology, Frontiers Media SA, volume 16, 2026. Frontiers Media SA. 10.3389/fimmu.2025.1726810
AI Methods for Health Journal Publication
Christel Baier, Rio Klatt, Sascha Klüppelholz, Johannes Lehmann
Backward Responsibility in Transition Systems Beyond Safety
In Proceedings of the 30th International Conference on Formal Methods for Industrial Critical Systems, FMICS 2025, Springer, 105-123, 2026. Springer. 10.1007/978-3-032-00942-5_6
Composite AI Conference Publication
Lea Bauer, Jonas Karge
Elicit and Weigh: A Voting-Based Approach to Optimal Weights in Imprecise Linear Pooling
In Proceedings of the 18th European Conference on Symbolic and Quantitative Approaches to Reasoning with Uncertainty, ECSQARU 2025, Springer, 253-266, 2026. Springer. 10.1007/978-3-032-05134-9_18
Composite AI Conference Publication
Manuel Bodirsky, Simon Knäuer, Sebastian Rudolph
Datalog-Expressibility for Monadic and Guarded Second-Order Logic
In ACM Transactions on Computational Logic, Association for Computing Machinery, volume 27, 2026. Association for Computing Machinery. 10.1145/3779418
Composite AI Journal Publication
Manoj Changat, John J. Chavara, M.R. Chithra, Joseph Mathew, Peter F Stadler
Step Systems on Graphs
In Vietnam Journal of Mathematics, Springer, 2026. Springer. 10.1007/s10013-026-00808-8
AI Methods for Health Journal Publication
Ana C. Chang-Gonzalez, Eric W. Bell, Carlos G. Vanoye, Eduardo Guadarrama, Reshma R. Desai, Jean-Marc DeKeyser, Kathryn R. Butcher, James Scott, Charles R. Sanders, Alfred L. George, Kaitlyn V. Ledwitch, Jens Meiler
Classification models for KCNQ1 variants distinguish functional and trafficking effects to enhance pathogenicity interpretation
In Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, volume 123, 2026. National Academy of Sciences. 10.1073/pnas.2537217123
AI Methods for Health Journal Publication
Katherine R. Clowes Moster, Carlos G. Vanoye, Ana C. Chang-Gonzalez, Ian M. Romaine, Katherine M. Stefanski, Mason C. Wilkinson, Joshua A. Bauer, Thomas P. Hasaka, Emily L. Days, Reshma R. Desai, Kathryn R. Butcher, Gary A. Sulikowski, Alex G. Waterson, Jens Meiler, Kaitlyn V. Ledwitch, Alfred L. George, Charles R. Sanders
High-throughput screening identifies a trafficking corrector for long QT syndrome–associated KCNQ1 variants
In JCI Insight , American Society for Clinical Investigation, volume 11, 1-19, 2026. American Society for Clinical Investigation. 10.1172/JCI.INSIGHT.201297
AI Methods for Health Journal Publication
Jan Clusmann, Paul-Henry Koop, David Y. Zhang, Felix van Haag, Omar S. M. El Nahhas, Tobias Seibel, Laura Žigutytė, Apichat Kaewdech, Julien Calderaro, Frank Tacke, Tom Luedde, Daniel Truhn, Tony Bruns, Kai Markus Schneider, Jakob Nikolas Kather, Carolin V. Schneider
Machine Learning Predicts Hepatocellular Carcinoma Risk from Routine Clinical Data: A Large Population-Based Multicentric Study
In Cancer Discovery, American Association for Cancer Research Inc., volume 16, 1304-1322, 2026. American Association for Cancer Research Inc.. 10.1158/2159-8290.CD-25-1323
Intelligent Medical Devices Journal Publication
Raimund Dachselt, Lukas Gerlach, Philipp Hanisch, Alex Ivliev, Markus Krötzsch, Maximilian Marx, Julián Méndez
Declarative Debugging for Datalog with Aggregation
In Proceedings of the 2026 Workshops of the EDBT/ICDT 2026 Joint Conference, EDBT/ICDT-WS 2026, CEUR-WS, 2026. CEUR-WS.
Composite AI Conference Publication
Salman Ul Hassan Dar, Marvin Seyfarth, Isabelle Ayx, Theano Papavassiliu, Stefan O. Schoenberg, Robert Siepmann, Fabian Christopher Laqua, Jannik Kahmann, Norbert Frey, Bettina Baeßler, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather, Sandy Engelhardt
Unconditional latent diffusion models memorize patient imaging data
In Nature Biomedical Engineering, Nature Research, volume 10, 458-472, 2026. Nature Research. 10.1038/s41551-025-01468-8
Intelligent Medical Devices Journal Publication
Matthias Elgeti, Julia Belyaeva, Mahdi Bagherpoor Helabad, Dean P. Staus, Laura M. Wingler
Angiotensin receptor conformations stabilized by biased ligands differentially modulate β-arrestin interactions
In Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology Inc., volume 302, 2026. American Society for Biochemistry and Molecular Biology Inc.. 10.1016/j.jbc.2025.111117
AI Methods for Health Journal Publication
Deianira Fejzaj, Richard Schroedter, Thomas Mikolajick, André Heinzig
Exfoliated-MoS2 Gradual Resistive Switching Devices as Artificial Synapses
In Advanced Electronic Materials, John Wiley and Sons Inc, 2026. John Wiley and Sons Inc. 10.1002/aelm.202500691
AI Compute Paradigms Journal Publication
Christina Fraenkel-Haeberle, Charlotte Langer
Automated Administrative Decisions and Due Process: A Comparative Analysis (Germany)
In Italian Journal of Public Law, 2026. Editoriale Scientifica.
Societal Framework for AI Other
Niklas Funk, Changqi Chen, Tim Schneider, Georgia Chalvatzaki, Roberto Calandra, Jan Peters
On the Importance of Tactile Sensing for Imitation Learning: A Case Study on Robotic Match Lighting
In IEEE Robotics and Automation Letters, IEEE, volume 11, 6218-6225, 2026. IEEE. 10.1109/LRA.2026.3677716
Composite AI Journal Publication
Richard Golnik, Peter F Stadler, Thomas Gatter
Atom Transition Networks and Isotope Labeling Patterns in Large Chemical Reaction Networks
In Match, University of Kragujevac, Faculty of Science, volume 95, 347-404, 2026. University of Kragujevac, Faculty of Science. 10.46793/match.95-2.15425
AI Methods for Health Journal Publication
Richard Golnik, Thomas Gatter, Peter F Stadler, Nicola Vassena
Enumeration of Autocatalytic Subsystems in Large Chemical Reaction Networks
In Journal of Chemical Theory and Computation, American Chemical Society, volume 22, 4888-4907, 2026. American Chemical Society. 10.1021/acs.jctc.5c01979
AI Methods for Health Journal Publication
Piotr Gorczyca, Hannes Strass
Non-Monotonic S4F Standpoint Logic
In Proceedings of the 40th AAAI Conference on Artificial Intelligence, AAAI 2026, AAAI, 19126-19134, 2026. AAAI. 10.1609/aaai.v40i23.38986
Conference Publication
Sevilay Gülesen, Victoria Most, Clara T. Schoeder, Jens Meiler
Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2
In PLOS ONE, Public Library of Science, volume 21, 2026. Public Library of Science. 10.1371/journal.pone.0351662
AI Methods for Health Journal Publication
Grover E.C. Guzman, Peter F Stadler, André Fujita
Spectral densities approximations of incidence-based locally treelike hypergraph matrices via the cavity method
In Physical Review E, American Physical Society, volume 113, 2026. American Physical Society. 10.1103/g997-gp7j
AI Methods for Health Journal Publication
Grover E.C. Guzman, Peter F Stadler, André Fujita
A message-passing approach to obtain the trace of matrix functions with applications to network analysis
In Numerical Algorithms, Springer, volume 101, 455-476, 2026. Springer. 10.1007/s11075-025-02012-0
AI Methods for Health Journal Publication
Philipp Hanisch, Markus Krötzsch
Rule Rewriting Revisited: A Fresh Look at Static Filtering for Datalog and ASP
In Proceedings of the 29th International Conference on Database Theory, ICDT 2026, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2026. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. 10.4230/LIPIcs.ICDT.2026.5
Composite AI Conference Publication
Sarah J. Harmych, Neeraj Joshi, Hidenori Tanaka, Galina Bogatcheva, Marisol A. Ramirez, Ramona Graves-Deal, Claiborne W. Tydings, Marina T. Elia, Hunter R Lischwe Mueller, Isabella M. Silvestri, Khaw Ti Ning, Claudia C. Wahoski, Chelsie K. Sievers, James N. Higginbotham, Maria Johnson Irudayam, Frank L. Revetta, Zhiguo Zhao, Jeffrey L. Franklin, Binyam Yilma, Tina M. O'Grady, Stamatina Fragkogianni, Metamia Ciampricotti, M Kay Washington, Xingyi Guo, Christine M. Lovly, Allison S. Walker, Jens Meiler, Krishna C. Mudumbi, Qi Liu, Robert J. Coffey, Eben Rosenthal, Bhuminder Singh
EGFR S442 ectodomain mutation confers cetuximab resistance that can be overcome by ERBB2 blockade with trastuzumab-deruxtecan
In Cancer Letters, Elsevier Ireland Ltd, volume 654, 2026. Elsevier Ireland Ltd. 10.1016/j.canlet.2026.218607
AI Methods for Health Journal Publication
Moritz Hehl
Regular graphs with positive Ollivier–Ricci curvature
In Mathematische Annalen, Springer, volume 394, 2026. Springer. 10.1007/s00208-026-03327-6
Composite AI Journal Publication
Oleksandra Herasymenko, Madhushika Silva, Galen J. Correy, Abd Al-Aziz A. Abu-Saleh, Suzanne Ackloo, Cheryl Arrowsmith, Alan Ashworth, Fuqiang Ban, Hartmut Beck, Kevin P. Bishop, Hugo J. Bohórquez, Albina Bolotokova, Marko Breznik, Irene Chau, Yu Chen, Artem Cherkasov, Wim Dehaen, Dennis Della Corte, Katrin Denzinger, Niklas P. Doering, Kristina Edfeldt, Aled Edwards, Darren Fayne, Francesco Gentile, Elisa Gibson, Ozan Gokdemir, Anders Gunnarsson, Judith Günther, John J. Irwin, Jan Halborg Jensen, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Ashley Hutchinson, Shubhangi Kandwal, Andrea Karlova, Kushal Koirala, Sergei Kotelnikov, Dima Kozakov, Juyong Lee, Soowon Lee, Uta Lessel, Sijie Liu, Xuefeng Liu, Peter Loppnau, Jens Meiler, Rocco Moretti, Yurii S. Moroz, Charuvaka Muvva, Tudor I. Oprea, Brooks Paige, Amit Pandit, Keunwan Park, Gennady Poda, Mykola V. Protopopov, Vera Pütter, Rahul Ravichandran, Didier Rognan, Edina Rosta, Yogesh Sabnis, Thomas Scott, Almagul Seitova, Purshotam Sharma, François Sindt, Minghu Song, Casper Steinmann, Rick Stevens, Valerij Talagayev, Valentyna V. Tararina, Olga Tarkhanova, Damon Tingey, John F. Trant, Dakota Treleaven, Alexander Tropsha, Patrick Walters, Jude Wells, Yvonne Westermaier, Gerhard Wolber, Lars Wortmann, Shuangjia Zheng, James S. Fraser, Matthieu Schapira
CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2
In Journal of Chemical Information and Modeling, American Chemical Society, volume 66, 1566-1581, 2026. American Chemical Society. 10.1021/acs.jcim.5c02441
AI Methods for Health Journal Publication
Katherine J Hewitt, Nic G. Reitsam, Sebastian Foersch, Ramona Erber, Qinghe Zeng, Jakob Nikolas Kather
HISTAI: a valuable dataset with a valuable lesson
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 12, 2026. John Wiley and Sons Inc. 10.1002/2056-4538.70089
Intelligent Medical Devices Journal Publication
Alex Ivliev, Markus Krötzsch, Maximilian Marx
SPARQLing Datalog for Rule-Based Reasoning over Large Knowledge Graphs
In Proceedings of the 23rd European Semantic Web Conference, ESWC 2026, Springer, 518-536, 2026. Springer. 10.1007/978-3-032-25156-5_27
Composite AI Conference Publication
Johnny Alexander Jimenez Siegert, Florian Kelber, Bernhard Vogginger, Paul Eisenhuth, Max Beining, Vivian Ehrlich, Johannes Partzsch, Christian Mayr, Jens Meiler
Rapid and energy-efficient ultra-large library screening for drug discovery on a SpiNNaker2 neuromorphic chip
In Communications Chemistry, Nature Research, volume 9, 2026. Nature Research. 10.1038/s42004-026-02122-3
AI Methods for Health Journal Publication
Radhika Juglan, Marta Ligero, Zunamys I. Carrero, Asier Rabasco Meneghetti, Tim Lenz, Leo Misera, Gregory P. Veldhuizen, Paul Kuntke, Hagen H. Kitzler, Sven Nebelung, Daniel Truhn, Jakob Nikolas Kather
Generalizable and explainable deep learning for brain MRI: a multi-cohort evaluation of 3D architectures for age and sex prediction
In Brain Informatics, Springer, volume 13, 2026. Springer. 10.1186/s40708-026-00316-y
Intelligent Medical Devices Journal Publication
Jonas Karge
Questions About Quantities: Epistemic Numerical Estimate Aggregation
In Proceedings of the 26th International Conference on Principles and Practice of Multi-Agent Systems, PRIMA 2025, Springer, 99-116, 2026. Springer. 10.1007/978-3-032-13562-9_8
Composite AI Conference Publication
Jonas Karge, Roy Ferguson, Daniel Grimaldi, Jonas Haldimann, Ruvarashe Madzime, Thomas Meyer
First Steps Towards Human-AI Ranking Aggregation
In Proceedings of the 2026 Joint Workshop on Statistics and Knowledge Integration for Logic, Learning, Ethical Decisions, and LLMs, SKILLED-LLMs 2026, CEUR-WS, 1-14, 2026. CEUR-WS.
Composite AI Conference Publication
Jakob Nikolas Kather
Artificial intelligence in oncology: from tools to teammates
In Annals of Oncology, Elsevier Ltd, volume 37, 442-444, 2026. Elsevier Ltd. 10.1016/j.annonc.2026.02.004
Intelligent Medical Devices Journal Publication
Max Kirchner, Alexander C. Jenke, Sebastian Bodenstedt, Fiona R. Kolbinger, Oliver Lester Saldanha, Jakob Nikolas Kather, Martin Wagner, Stefanie Speidel
Federated EndoViT: Pretraining Vision Transformers via Federated Learning on Endoscopic Image Collections
In Proceedings of the 9th International Conference on Medical Imaging with Deep Learning, MIDL 2026, ML Research Press, 1903-1934, 2026. ML Research Press.
Intelligent Medical Devices Conference Publication
Carsten Knoll, Julian Ullrich, Thomas Manjooran, Kilian Göller, Haadia Amjad, Ronald Tetzlaff, Steffen Seitz
XAIEV – A Framework for the Evaluation of XAI-Algorithms for Image Classification
In Proceedings of the 3rd World Conference on Explainable Artificial Intelligence, xAI 2025, Springer, 250-263, 2026. Springer. 10.1007/978-3-032-08327-2_12
AI Compute Paradigms Conference Publication
Fiona R. Kolbinger, Jakob Nikolas Kather
Agentic AI for interdisciplinary clinical decision support in high-stakes care
In JHEP Reports, Elsevier B.V., volume 8, 2026. Elsevier B.V.. 10.1016/j.jhepr.2026.101871
Intelligent Medical Devices Journal Publication
Dominik Krenzer, Martin Bogdan
Efficient Learning in Spiking Neural Networks - Introducing Feedback Alignment to the Reinforced Liquid State Machine
In Proceedings of the 34th International Conference on Artificial Neural Networks, ICANN 2025, Springer, 141-152, 2026. Springer. 10.1007/978-3-032-04558-4_12
AI Methods for Health Conference Publication
Lekshmi Kamal K-Sheela, Manoj Changat, M.R. Chithra, Peter F Stadler
Directed Weakly Modular Graphs and Their Directed Interval Functions
In Proceedings of the 12th International Conference on Algorithms and Discrete Applied Mathematics, CALDAM 2026, Springer, 236-249, 2026. Springer. 10.1007/978-3-032-17156-6_18
AI Methods for Health Conference Publication
Nils Küchenmeister, Alex Ivliev, Markus Krötzsch
Towards Mass Spectrum Analysis with ASP
In Theory and Practice of Logic Programming, Cambridge University Press, 2026. Cambridge University Press. 10.1017/S1471068426100398
Composite AI Journal Publication
Deniz Kucukahmetler, Maximilian Jean Hemmann, Julian Mosig Von Aehrenfeld, Maximilian Amthor, Christian Deubel, Nico Scherf, Diaaeldin Taha
Relative Geometry of Neural Forecasters: Linking Accuracy and Alignment in Learned Latent Geometry
In Transactions on Machine Learning Research, Transactions on Machine Learning Research, volume 2026 February, 2026. Transactions on Machine Learning Research.
Journal Publication
Narmin Ghaffari Laleh, Lukas Friedrich, Fuat Kaan Aras, Katherine J Hewitt, Leonille Schweizer, Zunamys I. Carrero, Dilan Savran, Daniel Haag, Silvia Barbosa, Felix Sahm, Jakob Nikolas Kather
AI-based selection of tumor regions for genomic profiling in neuropathology
In Neuro-Oncology Advances, Oxford University Press, volume 8, 2026. Oxford University Press. 10.1093/noajnl/vdag157
Intelligent Medical Devices Journal Publication
Junhao Liang, Xiaofeng Jiang, Nic G. Reitsam, Tim Lenz, Li Zhang, Marco Gustav, Zunamys I. Carrero, Hannah S. Muti, Peter Neidlinger, Jan Clusmann, Laura Žigutytė, Vidhya Sainath, Fabian Wolf, Lisa A. Boardman, Amy J. French, Ellen L. Goode, Andrea Gsur, Stefanie Brezina, Marc J. Gunter, Robert Steinfelder, Tabitha Harrison, Ulrike Peters, Amanda I. Phipps, Philip Quirke, Nicholas P. West, Michael Hoffmeister, Hermann Brenner, Durgesh Wankhede, Jitendra Jonnagaddala, Nicholas Hawkins, Robyn L. Ward, Elena Fountzilas, Kyriaki Papadopoulou, George Fountzilas, Thierry André, Julien Taieb, Jean-François Emile, Magali Svrcek, Lingjie Kong, Jakob Nikolas Kather
Spatial biomarker discovery via interpretable semantic learning in histopathology
In Cancer Cell, Cell Press, 2026. Cell Press. 10.1016/j.ccell.2026.05.014
Intelligent Medical Devices Journal Publication
Yunsong Liu, Zunamys I. Carrero, Xiaofeng Jiang, Dyke Ferber, Georg Wölflein, Li Zhang, Sanddhya Jayabalan, Tim Lenz, Zhouguang Hui, Jakob Nikolas Kather
Benchmarking large language model-based agent systems for clinical decision tasks
In npj Digital Medicine, Nature Research, volume 9, 2026. Nature Research. 10.1038/s41746-026-02443-6
Intelligent Medical Devices Journal Publication
Chiara M. L. Loeffler, Nic G. Reitsam, Fabian Wolf, Esther H. Stueker, Hannah S. Muti, Isabella Wiest, Jakob Nikolas Kather
SCRIPT: Stratified clinical risk prediction from pathology reports using large language models
In Journal of Pathology Informatics, Elsevier B.V., volume 22, 2026. Elsevier B.V.. 10.1016/j.jpi.2026.100673
Intelligent Medical Devices Journal Publication
Annabella Mascot, Siddharth Doshi, Robin Koch, Rayan Younis, Wentao Ke, Martin Wagner, Roberto Calandra, Mark Cutkosky
VISUAL-TACTILE SENSING FOR MINIMALLY INVASIVE PALPATION
In Proceedings of the 2026 Design of Medical Devices Conference, DMD 2026, American Society of Mechanical Engineers (ASME), 2026. American Society of Mechanical Engineers (ASME). 10.1115/DMD2026-1089
Composite AI Conference Publication
Leo Misera, Sven Nebelung, Zunamys I. Carrero, Keno Bressem, Marta Ligero, Jens-Peter Kühn, Ralf-Thorsten Hoffmann, Daniel Truhn, Jakob Nikolas Kather
Reducing manual workload in CT and MRI annotation with the Segment Anything Model 2
In BMC Medical Imaging, BioMed Central Ltd, volume 26, 2026. BioMed Central Ltd. 10.1186/s12880-025-02075-4
Intelligent Medical Devices Journal Publication
Christopher Moth, Jonathan H. Sheehan, Abdullah Al Mamun, R. Michael Sivley, Alican Gulsevin, David C. Rinker, Zenab F. Mchaourab, John A. Capra, Jens Meiler
VUStruct: A compute pipeline for high throughput and personalized structural biology
In PLOS ONE, Public Library of Science, volume 22, 2026. Public Library of Science. 10.1371/journal.pcbi.1014183
AI Methods for Health Journal Publication
Peter Neidlinger, Tim Lenz, Sebastian Foersch, Chiara M. L. Loeffler, Jan Clusmann, Marco Gustav, Lawrence A. Shaktah, Rupert Langer, Bastian Dislich, Lisa A. Boardman, Amy J. French, Ellen L. Goode, Andrea Gsur, Stefanie Brezina, Marc J. Gunter, Robert Steinfelder, Hans-Michael Behrens, Christoph Röcken, Tabitha Harrison, Ulrike Peters, Amanda I. Phipps, Giuseppe Curigliano, Nicola Fusco, Antonio Marra, Michael Hoffmeister, Hermann Brenner, Jakob Nikolas Kather
A deep learning framework for efficient pathology image analysis
In Nature Communications , Nature Research, volume 17, 2026. Nature Research. 10.1038/s41467-026-74918-9
Intelligent Medical Devices Journal Publication
Peter Neidlinger, Omar S. M. El Nahhas, Hannah S. Muti, Tim Lenz, Michael Hoffmeister, Hermann Brenner, Marko van Treeck, Rupert Langer, Bastian Dislich, Hans-Michael Behrens, Christoph Röcken, Sebastian Foersch, Daniel Truhn, Antonio Marra, Oliver Lester Saldanha, Jakob Nikolas Kather
Benchmarking foundation models as feature extractors for weakly supervised computational pathology
In Nature Biomedical Engineering, Nature Research, volume 10, 1113-1123, 2026. Nature Research. 10.1038/s41551-025-01516-3
Intelligent Medical Devices Journal Publication
Amos Onn, Tzipy Marx, Liming Tao, Tamir Biezuner, Ehud Shapiro, Christoph A. Klein, Peter F Stadler
Modeling the Mutational Dynamics of Very Short Tandem Repeats
In Proceedings of the 23rd RECOMB International Workshop on Comparative Genomics, RECOMB-CG 2026, Springer, 106-118, 2026. Springer. 10.1007/978-3-032-26891-4_6
AI Methods for Health Conference Publication
Tieu-Long Phan, Nhu-Ngoc Nguyen Song, Peter F Stadler
SynRXN: An Open Benchmark and Curated Dataset for Computational Reaction Modeling
In Scientific Data , Nature Research, volume 13, 2026. Nature Research. 10.1038/s41597-026-07260-w
AI Methods for Health Journal Publication
Tuyet-Minh Phan, Tieu-Long Phan, Phuoc-Chung Van Nguyen, Lai Hoang Son Le, Van-Thinh To, Tuyen Ngoc Truong, Daniel Merkle, Peter F Stadler
ProQSAR: A modular and reproducible framework for small-data QSAR modeling with fit-and-use models
In Journal of Cheminformatics, BioMed Central Ltd, volume 18, 2026. BioMed Central Ltd. 10.1186/s13321-026-01175-9
AI Methods for Health Journal Publication
Jakob Piribauer, Vinzent Zschuppe
The Modal Logic of Abstraction Refinement
In Proceedings of the 29th International Conference on Foundations of Software Science and Computation Structures, FoSSaCS 2026, Held as Part of the International Joint Conferences on Theory and Practice of Software, ETAPS 2026, Springer, 527-548, 2026. Springer. 10.1007/978-3-032-22730-0_25
Conference Publication
Asier Rabasco Meneghetti, Claudia Campani, Charles Roux, Zunamys I. Carrero, Dan-Adrian Popica, Giuliana Amaddeo, Marie Lequoy, Clémence Hollande, Sarah Mouri, Mathilde Wagner, Vincent Plaforet, Sabrina Sidali, Maxime Ronot, Marika Rudler, Alain Luciani, Olivier Sutter, Eleonore Spitzer, Hélène Regnault, Sanaâ El Mouhadi, Violaine Ozenne, Nathalie Ganne-Carrié, Mohamed Bouattour, Jean Charles Nault, Dominique Thabut, Jakob Nikolas Kather, Manon Allaire
Detection of esophageal varices and prediction of hepatic decompensation in unresectable hepatocellular carcinoma using AI
In Journal of Hepatology, Elsevier B.V., volume 84, 1149-1163, 2026. Elsevier B.V.. 10.1016/j.jhep.2026.01.021
Intelligent Medical Devices Journal Publication
Nic G. Reitsam, Xiaofeng Jiang, Junhao Liang, Bianca Grosser, Veselin Grozdanov, Chiara M. L. Loeffler, Marco Gustav, Tim Lenz, Hannah S. Muti, Zunamys I. Carrero, Nicholas P. West, Philip Quirke, Sebastian Foersch, Moritz Jesinghaus, Wolfram Müller, Tanwei Yuan, Michael Hoffmeister, Hermann Brenner, Jitendra Jonnagaddala, Nicholas Hawkins, Robyn L. Ward, Heike I. Grabsch, Bruno Märkl, Jakob Nikolas Kather
Deep learning-based H&E-derived risk scores in colorectal cancer: associations with tumour morphology, biology, and predicted drug response
In Journal of Pathology, John Wiley and Sons Ltd, volume 269, 112-124, 2026. John Wiley and Sons Ltd. 10.1002/path.70039
Intelligent Medical Devices Journal Publication
Oliver Lester Saldanha, Vivien Goepp, Kevin Pfeiffer, Hyojin Kim, Jiefu Zhu, Rafael Kramann, Sikander Hayat, Jakob Nikolas Kather
SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data
In npj Systems Biology and Applications, Nature Research, volume 12, 2026. Nature Research. 10.1038/s41540-026-00667-6
Intelligent Medical Devices Journal Publication
Maximilian Salomon, Maik Pankonin, Maeve Branwen Butler, Hossein Batebi, Peter F Stadler, Peter W. Hildebrand, Guillermo Pérez-Hernández
mdxplain: Scalable molecular dynamics analysis with machine learning-based feature selection and modular workflows
In Journal of Molecular Biology, Academic Press, volume 438, 2026. Academic Press. 10.1016/j.jmb.2026.169809
AI Methods for Health Journal Publication
Patrick Schöfer, James Danckert, Peter F Stadler, Martin Bogdan
Boredom as homeostasis of cognitive resource utilization using spiking neural networks
In Neurocomputing, Elsevier B.V., volume 679, 2026. Elsevier B.V.. 10.1016/j.neucom.2026.133203
AI Methods for Health Journal Publication
Jonas Schulz, Frederic Benken, Evelyn Muschter, Patrick Seeling, Stefanie Speidel, Frank H. P. Fitzek, Dario Cuevas Rivera
Anticipating Human Hand Grasps for Enhanced Interaction: A Bayesian Approach to Negative Latency in Human-Machine Interfaces
In IEEE Access, IEEE, volume 14, 77381-77400, 2026. IEEE. 10.1109/ACCESS.2026.3693875
Intelligent Medical Devices Composite AI Journal Publication
Jonas Schulz, Roy Schneider, Robyn Gehler, Patrick Seeling, Dario Cuevas Rivera, Frank H. P. Fitzek
Demonstrating Responsive Teleoperation Through Negative Latency
In Proceedings of the 2026 IEEE International Conference on Pervasive Computing and Communications Workshops and otherAffiliated Events, PerCom Workshops 2026, IEEE, 418-420, 2026. IEEE. 10.1109/PerComWorkshops68308.2026.11585418
Composite AI Conference Publication
Jonas Schulz, Patrick Seeling, Martin Reisslein, Frank H. P. Fitzek
No Further Delay: Making Time an Ally of Edge Computation of AI Workloads
In IEEE Internet of Things Magazine, IEEE, volume 9, 33-40, 2026. IEEE. 10.1109/MIOT.2025.3637145
Composite AI Journal Publication
Corinna Schüß, Oanh Vu, Tim Pelczyk, Mario Schubert, Yu Du, Jan Stichel, C. David Weaver, Jens Meiler, Annette G. Beck-Sickinger
The pathway-independent positive allosteric modulator C1 allows for the identification of active Y4 receptor relevant positions
In Cellular and Molecular Life Sciences, Springer, volume 83, 2026. Springer. 10.1007/s00018-025-06019-7
AI Methods for Health Journal Publication
Denis Skibinski, Thomas Spicher, Leonhard Sidl, Paulína Holotová, Yingjie Pan, Maximilian Faissner, Cristian A. Velandia-Huerto, Ronny Lorenz, Maria Waldl, Hua-Ting Yao, Peter F Stadler
Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction
In Proceedings of the 21st International Symposium on Bioinformatics Research and Applications, ISBRA 2025, Springer, 151-162, 2026. Springer. 10.1007/978-981-95-0695-8_13
AI Methods for Health Conference Publication
Cynthia Tchio, Matthew Maher, Christopher Moth, Jens Meiler, Jacqueline M. Lane, Herman A. Taylor, Jonathan S. Williams, Richa Saxena
Circadian ADCY3 Ser107Pro variant bridges difficulty awakening in the morning and adiposity
In iScience, Elsevier Inc., volume 29, 2026. Elsevier Inc.. 10.1016/j.isci.2025.114587
AI Methods for Health Journal Publication
Daniel Truhn, Shekoofeh Azizi, James Zou, Leonor Cerda-Alberich, Faisal Mahmood, Jakob Nikolas Kather
Artificial intelligence agents in cancer research and oncology
In Nature Reviews Cancer, Nature Research, volume 26, 256-269, 2026. Nature Research. 10.1038/s41568-025-00900-0
Intelligent Medical Devices Journal Publication
Claiborne W. Tydings, Rocco Moretti, Jens Meiler, Allison S. Walker
Lanthipeptide structure prediction and design with Rosetta
In Methods in Enzymology, Academic Press Inc., volume 730, 107-133, 2026. Academic Press Inc.. 10.1016/bs.mie.2026.01.001
AI Methods for Health Journal Publication
Dulce I. Valdivia, Peter F Stadler
Regulation of tRNA expression during the social cycle of the amoeba Dictyostelium discoideum
In BMC Molecular and Cell Biology, BioMed Central Ltd, volume 27, 2026. BioMed Central Ltd. 10.1186/s12860-026-00580-0
AI Methods for Health Journal Publication
Phuoc-Chung Van Nguyen, Van-Thinh To, Ngoc-Vi Nguyen Tran, Tieu-Long Phan, Tuyen Ngoc Truong, Thomas Gärtner, Daniel Merkle, Peter F Stadler
SynCat: molecule-level attention graph neural network for precise reaction classification
In Digital Discovery, Royal Society of Chemistry, volume 5, 241-253, 2026. Royal Society of Chemistry. 10.1039/d5dd00367a
AI Methods for Health Journal Publication
Danush Kumar Venkatesh, Isabel Funke, Micha Pfeiffer, Fiona R. Kolbinger, Hanna Maria Schmeiser, Marius Distler, Jürgen Weitz, Stefanie Speidel
Mission Balance: Generating Under-Represented Class Samples Using Video Diffusion Models
In Proceedings of the 28th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2025, Springer, 412-422, 2026. Springer. 10.1007/978-3-032-05141-7_40
Intelligent Medical Devices Conference Publication
Christian Vielhaus, Caspar von Lengerke, Vincent Latzko, Justus Rischke, Martin Reisslein, Frank H. P. Fitzek
Evaluating Transport Layer Congestion Control Algorithms: A Comprehensive Survey
In IEEE Communications Surveys and Tutorials, IEEE, volume 28, 278-340, 2026. IEEE. 10.1109/COMST.2025.3533303
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Magdalena K. Wekenborg, Christian Rominger, Elizabeth A. M. Michels, Isabella Wiest, Lonni Treiber, Andreas R. Schwerdtfeger, Jakob Nikolas Kather
Beyond the Lab: Capturing User Experience in the Wild with Psychophysiological Ambulatory Assessment
In Proceedings of the 23rd International Conference on Engineering Psychology and Cognitive Ergonomics, EPCE 2026, Springer, 482-492, 2026. Springer. 10.1007/978-3-032-30552-7_46
Intelligent Medical Devices Conference Publication
Magdalena K. Wekenborg, Elizabeth A. M. Michels, Georg Kurze, Matti Lasse Kropp, Fabian Wolf, Josi Harzbecker, Isabella Wiest, Jakob Nikolas Kather
Large language models as experimental systems in human psychopathology: a modelling study
In The Lancet Digital Health, Elsevier Ltd, volume 8, 2026. Elsevier Ltd. 10.1016/j.landig.2026.101014
Intelligent Medical Devices Journal Publication
Meri Abgaryan, Xinning Cui, Nandu Gopan, Gabriel della Maggiora, Artur Yakimovich, Ivo F. Sbalzarini
Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy
In Small Methods, John Wiley and Sons Inc, volume 9, 2025. John Wiley and Sons Inc. 10.1002/smtd.202401900
AI Methods for Health Journal Publication
Sophie Adama, Martin Bogdan
Analysis of Auditory Oddball Paradigm During Hypnosis
In Proceedings of the 21st IFIP WG 12.5 International Conference on Artificial Intelligence Applications and Innovations, AIAI 2025, Springer, 119-131, 2025. Springer. 10.1007/978-3-031-96239-4_9
AI Methods for Health Conference Publication
Sophie Adama, Martin Bogdan
Assessing consciousness in patients with locked-in syndrome using their EEG
In Frontiers in Neuroscience, Frontiers Media SA, volume 19, 2025. Frontiers Media SA. 10.3389/fnins.2025.1604173
AI Methods for Health Journal Publication
Rajab Aghamov, Christel Baier, Toghrul Karimov, Rupak Majumdar, Joël Ouaknine, Jakob Piribauer, Timm Spork
Model Checking Linear Temporal Logic with Standpoint Modalities
In Proceedings of the 22nd International Conference on Principles of Knowledge Representation and Reasoning, KR 2025, AAAI, 2-11, 2025. AAAI. 10.24963/kr.2025/1
Composite AI Conference Publication
Christian Alrabbaa, Stefan Borgwardt, Philipp Herrmann, Markus Krötzsch
The Shape of EL Proofs: A Tale of Three Calculi
In Proceedings of the 38th International Workshop on Description Logics, DL 2025 , CEUR-WS, 2025. CEUR-WS.
Composite AI Conference Publication
Lucía Gómez Álvarez, Sebastian Rudolph
Putting Perspective into OWL [sic]: Complexity-Neutral Standpoint Reasoning for Ontology Languages via Monodic S5 over Counting Two-Variable First-Order Logic
In Proceedings of the 22nd International Conference on Principles of Knowledge Representation and Reasoning, KR 2025, AAAI, 366-375, 2025. AAAI. 10.24963/kr.2025/36
Composite AI Conference Publication
Haadia Amjad
Temporal Explainable AI Models for Surgery Evaluation
In Proceedings of the Joint of the xAI 2025 Late-Breaking Work, Demos and Doctoral Consortium, LB/D/DC@xAI 2025, CEUR-WS, 401-408, 2025. CEUR-WS.
AI Compute Paradigms Conference Publication
Kossi Amouzouvi, Yashrajsinh Chudasama, Disha Purohit, Ariam Rivas, Bowen Song, Jens Lehmann, Sahar Vahdati, Maria-Esther Vidal
SimE: A Knowledge Graph Embedding Model to Encode Self-Similar Structures Through Algebraic and Geometric Transformations
In IEEE Access, IEEE, volume 13, 74701-74719, 2025. IEEE. 10.1109/ACCESS.2025.3564130
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Arun Anil, Manoj Changat, John J. Chavara, Lekshmi Kamal K-Sheela, Prasanth G. Narasimha-Shenoi, Bruno J. Schmidt, Ameera Vaheeda Shanavas, Peter F Stadler
Directed Transit Functions
In Results in Mathematics, Birkhauser, volume 80, 2025. Birkhauser. 10.1007/s00025-025-02354-0
AI Methods for Health Journal Publication
Dörthe Arndt, Stephan Mennicke
Existential Notation3 Logic
In Theory and Practice of Logic Programming, Cambridge University Press, 2025. Cambridge University Press. 10.1017/S1471068425000055
Composite AI Journal Publication
Christel Baier, Sascha Klüppelholz, Johannes Lehmann
Responsibility in Actor-Based Systems
In Lecture Notes in Computer Science, Springer, volume 15560 LNCS, 44-69, 2025. Springer. 10.1007/978-3-031-85134-6_3
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Christel Baier, Sascha Klüppelholz, Jakob Piribauer, Robin Ziemek
Formal Quality Measures for Predictors in Markov Decision Processes
In Proceedings of the 39th Annual AAAI Conference on Artificial Intelligence, AAAI 2025, AAAI, 26760-26768, 2025. AAAI. 10.1609/aaai.v39i25.34879
Composite AI Conference Publication
Lea Bauer, Jonas Karge
Multi-agent Opinion Pooling by Voting for Bins: Simulations and Characterization
In Proceedings of the 22nd International Conference on Practical Applications of Agents and Multi-Agent Systems, PAAMS 2024, Springer, 49-60, 2025. Springer. 10.1007/978-3-031-70415-4_5
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Lorenz Beckmann, Fabian Liessmann, Maik Icker, Dominic Rieger, Phillip Schlegel, Nicole Urban, Michael Schaefer, Jens Meiler, Clara T. Schoeder, Maik Tretbar
Identification and optimization of a small molecule inhibitor of the ovarian tumor protease of the Crimean-Congo hemorrhagic fever virus
In Bioorganic and Medicinal Chemistry, Elsevier Ltd, volume 120, 2025. Elsevier Ltd. 10.1016/j.bmc.2025.118093
AI Methods for Health Journal Publication
Eric W. Bell, Benjamin P. Brown, Jens Meiler
FakeRotLib: Expedient Noncanonical Amino Acid Parametrization in Rosetta
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 8397-8404, 2025. American Chemical Society. 10.1021/acs.jcim.5c01030
AI Methods for Health Journal Publication
Jean-Paul Bereuter, Mark Enrik Geissler, Anna Klimova, Robert-Patrick Steiner, Kevin Pfeiffer, Fiona R. Kolbinger, Isabella Wiest, Hannah S. Muti, Jakob Nikolas Kather
Benchmarking Vision Capabilities of Large Language Models in Surgical Examination Questions
In Journal of Surgical Education, Elsevier Inc., volume 82, 2025. Elsevier Inc.. 10.1016/j.jsurg.2025.103442
Intelligent Medical Devices Journal Publication
Meghna Bhadra
Disentangling Belief and Inference: Adaptive Algorithms for Individual Human Reasoning
In Proceedings of the 28th European Conference on Artificial Intelligence, ECAI 2025, including 14th Conference on Prestigious Applications of Intelligent Systems, PAIS 2025, IOS Press BV, 1454-1461, 2025. IOS Press BV. 10.3233/FAIA250966
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Kevin M. Boehm, Omar S. M. El Nahhas, Antonio Marra, Michele Waters, Justin Jee, Lior Braunstein, Nikolaus Schultz, Pier Selenica, Hannah Y. Wen, Britta Weigelt, Evan D. Paul, Pavol Cekan, Ramona Erber, Chiara M. L. Loeffler, Elena Guerini-Rocco, Nicola Fusco, Chiara Frascarelli, Eltjona Mane, Elisabetta Munzone, Silvia Dellapasqua, Paola Zagami, Giuseppe Curigliano, Pedram Razavi, Jorge S. Reis-Filho, Fresia Pareja, Sarat Chandarlapaty, Sohrab P. Shah, Jakob Nikolas Kather
Multimodal histopathologic models stratify hormone receptor-positive early breast cancer
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-57283-x
Intelligent Medical Devices Journal Publication
Till Braun, Florian Kuschel, Kristin Reiche, Maximilian Merz, Marco Herling
Emerging T-cell lymphomas after CAR T-cell therapy
In Leukemia, Springer Nature, volume 39, 1337-1341, 2025. Springer Nature. 10.1038/s41375-025-02574-x
AI Methods for Health Journal Publication
Till Braun, Michael Rade, Maximilian Merz, Hanna Klepzig, Florian Große, David Fandrei, Nhu-Nguyen Pham, Markus Kreuz, Christina Katharina Kuhn, Florian Kuschel, Dennis Löffler, Jörn Meinel, Eva Heger, Viola Schweinsberg, Natali Pflug, Uwe Platzbecker, Michael Hallek, Udo Holtick, Ulrike Köhl, Christof Scheid, Kristin Reiche, Marco Herling, Tim Richardson
Multiomic profiling of T cell lymphoma after therapy with anti-BCMA CAR T cells and GPRC5D-directed bispecific antibody
In Nature Medicine, Nature Research, volume 31, 1145-1153, 2025. Nature Research. 10.1038/s41591-025-03499-9
AI Methods for Health Journal Publication
James Alexander Brooks, Michael Kallenbach, Iuliana-Pompilia Radu, Annalisa Berzigotti, Christoph F. Dietrich, Jakob Nikolas Kather, Tom Luedde, Tobias Paul Seraphin
Artificial Intelligence for Contrast-Enhanced Ultrasound of the Liver: A Systematic Review
In Digestion, S. Karger AG, volume 106, 227-244, 2025. S. Karger AG. 10.1159/000541540
Intelligent Medical Devices Journal Publication
Lucas Carr, Nicholas Leisegang, Thomas Meyer, Sebastian Rudolph
Non-monotonic Extensions to Formal Concept Analysis via Object Preferences
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 476-492, 2025. Springer. 10.1007/978-3-031-78255-8_28
Composite AI Conference Publication
David Carral, Lukas Gerlach, Lucas Larroque, Michaël Thomazo
Restricted Chase Termination: You Want More than Fairness (Extended Abstract)
In Proceedings of the 38th International Workshop on Description Logics, DL 2025 , CEUR-WS, 2025. CEUR-WS.
Composite AI Conference Publication
Manoj Changat, Ameera Vaheeda Shanavas, Peter F Stadler
Transit functions and clustering systems
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1782.ec6
AI Methods for Health Journal Publication
Yazhou Chen, Benjamin P. M. Laevens, Teresa Lemainque, Gustav Anton Müller-Franzes, Tobias Seibel, Carola Dlugosch, Jan Clusmann, Paul-Henry Koop, Rongpeng Gong, Yuanyuan Liu, Niharika Jakhar, Feng Cao, Simon Schophaus, Thriveni Basavanapura Raju, Anastasia Artemis Raptis, Felix van Haag, Joel Joy, Rohit Loomba, Luca Valenti, Jakob Nikolas Kather, Titus J. Brinker, Moritz Herzog, Ivan G. Costa, Diego Hernando, Kai Markus Schneider, Daniel Truhn, Carolin V. Schneider
Deep Learning Reveals Liver MRI Features Associated With PNPLA3 I148M in Steatotic Liver Disease
In Liver International, John Wiley and Sons Inc, volume 45, 2025. John Wiley and Sons Inc. 10.1111/liv.70164
Intelligent Medical Devices Journal Publication
Jan Clusmann, Maria Balaguer-Montero, Octavi Bassegoda, Carolin V. Schneider, Tobias Paul Seraphin, Ellis Paintsil, Tom Luedde, Raquel Perez Lopez, Julien Calderaro, Stephen Gilbert, Thomas Marjot, Ashley Spann, Debbie L. Shawcross, Sabela Lens, Eric Trépo, Jakob Nikolas Kather
The barriers to uptake of artificial intelligence in hepatology and how to overcome them
In Journal of Hepatology, Elsevier B.V., volume 83, 1410-1426, 2025. Elsevier B.V.. 10.1016/j.jhep.2025.07.003
Intelligent Medical Devices Journal Publication
Jan Clusmann, Dyke Ferber, Isabella Wiest, Carolin V. Schneider, Titus J. Brinker, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
Prompt injection attacks on vision language models in oncology
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-024-55631-x
Intelligent Medical Devices Journal Publication
Julia Di, Zdravko Dugonjić, Will Fu, Tingfan Wu, Romeo Mercado, Kevin Sawyer, Victoria Most, Gregg Kammerer, Stefanie Speidel, Richard E. Fan, Geoffrey Sonn, Mark Cutkosky, Mike Lambeta, Roberto Calandra
Using Fiber Optic Bundles to Miniaturize Vision-Based Tactile Sensors
In IEEE Transactions on Robotics, IEEE, volume 41, 62-81, 2025. IEEE. 10.1109/TRO.2024.3492375
Intelligent Medical Devices Composite AI Journal Publication
Martin Diller, Sarah Alice Gaggl, Philipp Hanisch, Giuseppina Monterosso, Fritz Rauschenbach
Grounding Rule-Based Argumentation Using Datalog
In Proceedings of the 22nd International Conference on Principles of Knowledge Representation and Reasoning, KR 2025, AAAI, 281-292, 2025. AAAI. 10.24963/kr.2025/28
Composite AI Conference Publication
Nico Domschke, Bruno J. Schmidt, Thomas Gatter, Richard Golnik, Paul Eisenhuth, Fabian Liessmann, Jens Meiler, Peter F Stadler
Crossover operators for molecular graphs with an application to virtual drug screening
In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-00958-w
AI Methods for Health Journal Publication
Nico Domschke, Thomas Gatter, Richard Golnik, Peter F Stadler
A short note on relevant cuts
In Art of Discrete and Applied Mathematics, University of Primorska, 1-13, 2025. University of Primorska. 10.26493/2590-9770.1845.02e
AI Methods for Health Journal Publication
Omar S. M. El Nahhas, Marko van Treeck, Georg Wölflein, Michaela Unger, Marta Ligero, Tim Lenz, Sophia J. Wagner, Katherine J Hewitt, Firas Khader, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology
In Nature Protocols, Springer Nature, volume 20, 293-316, 2025. Springer Nature. 10.1038/s41596-024-01047-2
Intelligent Medical Devices Journal Publication
Faiq Miftakhul Falakh, Sebastian Rudolph, Kai Sauerwald
AGM Belief Revision, Semantically
In ACM Transactions on Computational Logic, Association for Computing Machinery, volume 26, 2025. Association for Computing Machinery. 10.1145/3763234
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David Fandrei, Sabine Seiffert, Michael Rade, Susanne Rieprecht, Nico Gagelmann, Patrick Born, Thomas Wiemers, Heike Weidner, Markus Kreuz, Tamara Schassberger, Jannik Koßmann, Marlene Mangold, Daniel Fürst, Luise Fischer, Ronny Baber, Simone Heyn, Song Yau Wang, Enrica Bach, Sandra Hoffmann, Klaus H. Metzeler, Marco Herling, Madlen Jentzsch, Georg-Nikolaus Franke, Ulrike Köhl, Maik Friedrich, Andreas Boldt, Kristin Reiche, Uwe Platzbecker, Vladan Vucinic, Maximilian Merz
Bispecific Antibodies as Bridging to BCMA CAR-T Cell Therapy for Relapsed/Refractory Multiple Myeloma
In Blood Cancer Discovery, American Association for Cancer Research Inc., volume 6, 38-54, 2025. American Association for Cancer Research Inc.. 10.1158/2643-3230.BCD-24-0118
AI Methods for Health Journal Publication
Deianira Fejzaj, Richard Schroedter, Thomas Mikolajick, André Heinzig
A Vertical Memristive MoS2-exfoliated Device for Applications in Artificial Synapses
In Proceedings of the 14th International Conference on Modern Circuits and Systems Technologies, MOCAST 2025, IEEE, 2025. IEEE. 10.1109/MOCAST65744.2025.11083941
AI Compute Paradigms Conference Publication
Christoph Flamm, Daniel Merkle, Peter F Stadler
Computation in chemical graph rewriting networks
In Journal of Physics: Complexity, Institute of Physics, volume 6, 2025. Institute of Physics. 10.1088/2632-072X/adb7b1
AI Methods for Health Journal Publication
Christoph Flamm, Daniel Merkle, Peter F Stadler
Assembly in Directed Hypergraphs
In Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Royal Society Publishing, volume 481, 2025. Royal Society Publishing. 10.1098/rspa.2025.0331
AI Methods for Health Journal Publication
Daniel Frau-Alfaro, Julio Castaño-Amoros, Santiago Puente, Pablo Gil, Roberto Calandra
Learning Dexterous Object Handover
In Proceedings of the 34th IEEE International Conference on Robot and Human Interactive Communication, RO-MAN 2025, IEEE Computer Society, 380-387, 2025. IEEE Computer Society. 10.1109/RO-MAN63969.2025.11217592
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Oscar Freyer, Sanddhya Jayabalan, Jakob Nikolas Kather, Stephen Gilbert
Overcoming regulatory barriers to the implementation of AI agents in healthcare
In Nature Medicine, Nature Research, volume 31, 3239-3243, 2025. Nature Research. 10.1038/s41591-025-03841-1
Intelligent Medical Devices Journal Publication
Lukas Gerlach, Lucas Larroque, Jerzy Marcinkowski, Piotr Ostropolski-Nalewaja
About the Multi-Head Linear Restricted Chase Termination
In Proceedings of the 22nd International Conference on Principles of Knowledge Representation and Reasoning, KR 2025, AAAI, 346-355, 2025. AAAI. 10.24963/kr.2025/34
Composite AI Conference Publication
Hamed Babaei Giglou, Simon Burbach, Francesco Compagno, Muhammad Ismail, Gunjan Singh, Sebastian Rudolph
Beyond Statistical Parroting: Hard-Coding Truth into LLMs via Ontologies
In Proceedings of the 2nd International Workshop on Retrieval-Augmented Generation Enabled by Knowledge Graphs, RAGE-KG 2025, CEUR-WS, 120-131, 2025. CEUR-WS.
Composite AI Conference Publication
Marcos E. González Laffitte, Tieu-Long Phan, Peter F Stadler
Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms
In Proceedings of the 25th International Conference on Algorithms for Bioinformatics, WABI 2025, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2025. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. 10.4230/LIPIcs.WABI.2025.12
AI Methods for Health Conference Publication
Marco Gustav, Marko van Treeck, Nic G. Reitsam, Zunamys I. Carrero, Chiara M. L. Loeffler, Asier Rabasco Meneghetti, Bruno Märkl, Lisa A. Boardman, Amy J. French, Ellen L. Goode, Andrea Gsur, Stefanie Brezina, Marc J. Gunter, Neil Murphy, Pia Hönscheid, Christian Sperling, Sebastian Foersch, Robert Steinfelder, Tabitha Harrison, Ulrike Peters, Amanda I. Phipps, Jakob Nikolas Kather
Assessing genotype−phenotype correlations in colorectal cancer with deep learning: a multicentre cohort study
In The Lancet Digital Health, Elsevier Ltd, volume 7, 2025. Elsevier Ltd. 10.1016/j.landig.2025.100891
Intelligent Medical Devices Journal Publication
Grover E.C. Guzman, Marcos E. González Laffitte, André Fujita, Peter F Stadler
Primitive, edge-short, isometric, and pantochordal cycles
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1754.cd0
AI Methods for Health Journal Publication
Adnan Haidar, Amir Khan, Vasileios Ntinas, Jorge Fernández-Berni, Ricardo Carmona-Galán, Ronald Tetzlaff
Attention-driven PCM-based In-Memory Computing for Smart Vision Systems
In Proceedings of the 2025 IEEE International Symposium on Circuits and Systems, ISCAS 2025, IEEE, 2025. IEEE. 10.1109/ISCAS56072.2025.11044041
AI Compute Paradigms Conference Publication
Adnan Haidar, Ahmed Abdelsamad, Hongliu Yang, Vasileios Ntinas, Ronald Tetzlaff
Temporal Drift-Regularization and Hyperparameter Optimization for Phase-Change Memory-based Neural Network Applications
In Proceedings of the 37th International Conference on Microelectronics, ICM 2025, IEEE, 2025. IEEE. 10.1109/ICM66518.2025.11322501
AI Compute Paradigms Conference Publication
Moritz Hehl
Graphs with Lin-Lu-Yau curvature at least one and regular bone-idle graphs
In Calculus of Variations and Partial Differential Equations, Springer, volume 64, 2025. Springer. 10.1007/s00526-025-03052-z
Composite AI Journal Publication
Katherine J Hewitt, Isabella Wiest, Jakob Nikolas Kather
Authors' reply: Re: Koga et al. Retrieval-augmented generation versus document-grounded generation: a key distinction in large language models
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 11, 2025. John Wiley and Sons Inc. 10.1002/2056-4538.70013
Intelligent Medical Devices Journal Publication
Simon Hosemann, Jean Christoph Jung, Carsten Lutz, Sebastian Rudolph
Fitting Ontologies and Constraints to Relational Structures (Extended Abstract)
In Proceedings of the 38th International Workshop on Description Logics, DL 2025 , CEUR-WS, 2025. CEUR-WS.
Composite AI Conference Publication
Simon Hosemann, Jean Christoph Jung, Carsten Lutz, Sebastian Rudolph
Fitting Ontologies and Constraints to Relational Structures
In Proceedings of the 22nd International Conference on Principles of Knowledge Representation and Reasoning, KR 2025, AAAI, 407-416, 2025. AAAI. 10.24963/kr.2025/40
Composite AI Conference Publication
Shan Jiang, Zhaoqian Su, Nathaniel Bloodworth, Yunchao Yunchao Lance Liu, Cristina E. Martina, David G. Harrison, Jens Meiler
Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201
In PLOS ONE, Public Library of Science, volume 20, 2025. Public Library of Science. 10.1371/journal.pone.0314833
AI Methods for Health Journal Publication
Jitendra Jonnagaddala, Miljana Shulajkovska, Anton Gradišek, Toni Rose Jue, Qifeng Zhou, Yuzhi Guo, Jamil Mahmoud El Chayeb, Ruijiang Li, Jana Lipkova, Jakob Nikolas Kather, Junzhou Huang
Multimodal analysis of whole slide images in colorectal cancer
In npj Digital Medicine, Nature Research, volume 8, 2025. Nature Research. 10.1038/s41746-025-02095-y
Intelligent Medical Devices Journal Publication
Peter Kappelt, Christian Vielhaus, Justus Rischke, Marek Sobe, Frank H. P. Fitzek
Machine Learning for In-Network Spatial Localization within Wireless Mesh Networks
In Proceedings of the 2025 IEEE International Conference on Communications Workshops, ICC Workshops 2025, IEEE, 1882-1887, 2025. IEEE. 10.1109/ICCWorkshops67674.2025.11162342
Composite AI Conference Publication
Jonas Karge
Taming Dilation in Imprecise Pooling
In Proceedings of the 25th International Conference on Principles and Practice of Multi-Agent Systems, PRIMA 2024, Springer, 428-443, 2025. Springer. 10.1007/978-3-031-77367-9_32
Composite AI Conference Publication
Pascal Kettmann, Jesse Heyninck, Hannes Strass
Approximation Fixpoint Theory as a Unifying Framework for Fuzzy Logic Programming Semantics
In Proceedings of the 34th Internationa Joint Conference on Artificial Intelligence, IJCAI 2025, International Joint Conferences on Artificial Intelligence, 4544-4552, 2025. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2025/506
Composite AI Conference Publication
Fiona R. Kolbinger, Jakob Nikolas Kather
Adaptive validation strategies for real-world clinical artificial intelligence
In Nature Computational Science, Springer Nature, volume 5, 980-986, 2025. Springer Nature. 10.1038/s43588-025-00901-x
Intelligent Medical Devices Journal Publication
Fiona R. Kolbinger, Omar S. M. El Nahhas, Maja Carina Nackenhorst, Christine Brostjan, Wolf Eilenberg, Albert Busch, Jakob Nikolas Kather
Histopathological evaluation of abdominal aortic aneurysms with deep learning
In Diagnostic Pathology , BioMed Central Ltd, volume 20, 2025. BioMed Central Ltd. 10.1186/s13000-025-01684-5
Intelligent Medical Devices Journal Publication
Dominik Krenzer, Martin Bogdan
Reinforced liquid state machines—new training strategies for spiking neural networks based on reinforcements
In Frontiers in Computational Neuroscience, Frontiers Media SA, volume 19, 2025. Frontiers Media SA. 10.3389/fncom.2025.1569374
AI Methods for Health Journal Publication
Markus Krötzsch
Modern Datalog: Concepts, Methods, Applications
In Proceedings of the 20th and 21st Reasoning Web Summer Schools, RW 2024 and RW 2025, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2025. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. 10.4230/OASIcs.RW.2024/2025.7
Composite AI Conference Publication
Nils Küchenmeister, Alex Ivliev, Markus Krötzsch
Towards Mass Spectrum Analysis with ASP
In Proceedings of the 17th International Conference on Logic Programming and Non-monotonic Reasoning, LPNMR 2024, Springer, 200-214, 2025. Springer. 10.1007/978-3-031-74209-5_16
Composite AI Conference Publication
Tim Langer, Matthias Jobst, Chen Liu, Florian Kelber, Bernhard Vogginger, Christian Mayr
OctopuScheduler: On-Chip DNN Scheduling on the SpiNNaker2 Neuromorphic MPSoC
In Proceedings of the 12th Annual IEEE Neuro-Inspired Computational Elements, NICE 2025, IEEE, 2025. IEEE. 10.1109/NICE65350.2025.11065866
AI Compute Paradigms Conference Publication
Nicholas Leisegang, Thomas Meyer, Sebastian Rudolph
Towards Propositional KLM-Style Defeasible Standpoint Logics
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 459-475, 2025. Springer. 10.1007/978-3-031-78255-8_27
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In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-01084-3
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Artificial intelligence-based biomarkers for treatment decisions in oncology
In Trends in Cancer, Cell Press, volume 11, 232-244, 2025. Cell Press. 10.1016/j.trecan.2024.12.001
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In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-01038-9
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HIBRID: histology-based risk-stratification with deep learning and ctDNA in colorectal cancer
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-62910-8
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Deep Learning Discovers New Morphological Features while Predicting Genetic Alterations from Histopathology of Papillary Thyroid Carcinoma
In Thyroid, Mary Ann Liebert Inc., volume 35, 771-780, 2025. Mary Ann Liebert Inc.. 10.1089/thy.2024.0691
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Cholesterol allosteric modulation of the oxytocin receptor
In Biophysical Journal, Elsevier B.V., volume 124, 1930-1943, 2025. Elsevier B.V.. 10.1016/j.bpj.2025.04.023
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In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-64712-4
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In SIAM Journal on Optimization, Society for Industrial and Applied Mathematics Publications, volume 35, 1060-1088, 2025. Society for Industrial and Applied Mathematics Publications. 10.1137/24M16534221
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In International Journal of Approximate Reasoning, Elsevier Inc., volume 186, 2025. Elsevier Inc.. 10.1016/j.ijar.2025.109523
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In Cell, Elsevier B.V., volume 188, 6151-6169.e24, 2025. Elsevier B.V.. 10.1016/j.cell.2025.07.041
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In npj Digital Medicine, Nature Research, volume 8, 2025. Nature Research. 10.1038/s41746-025-02175-z
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SynKit: A Graph-Based Python Framework for Rule-Based Reaction Modeling and Analysis
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 13012-13019, 2025. American Chemical Society. 10.1021/acs.jcim.5c02123
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SynTemp: Efficient Extraction of Graph-Based Reaction Rules from Large-Scale Reaction Databases
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 2882-2896, 2025. American Chemical Society. 10.1021/acs.jcim.4c01795
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From Simple to Complex Skills: The Case of In-Hand Object Reorientation
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In Structure, Cell Press, volume 33, 2010-2012, 2025. Cell Press. 10.1016/j.str.2025.11.008
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RosettaHDX: Predicting antibody-antigen interaction from hydrogen-deuterium exchange mass spectrometry data
In Journal of Structural Biology, Academic Press Inc., volume 217, 2025. Academic Press Inc.. 10.1016/j.jsb.2025.108166
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Synergy of advanced machine learning and deep neural networks with consensus molecular docking for virtual screening of anaplastic lymphoma kinase inhibitors
In Journal of Computer-Aided Molecular Design, Springer, volume 39, 2025. Springer. 10.1007/s10822-025-00657-6
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Computational structure prediction of lanthipeptides with NMR data reveals underappreciated peptide flexibility
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Effective Explanations for Belief-Desire-Intention Robots: When and What to Explain
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Evetac: An Event-Based Optical Tactile Sensor for Robotic Manipulation
In IEEE Transactions on Robotics, IEEE, volume 40, 3812-3832, 2024. IEEE. 10.1109/TRO.2024.3428430
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Bernhard Ganter, Tom Hanika, Johannes Hirth, S. Obiedkov
Collaborative Hybrid Human AI Learning through Conceptual Exploration
In Proceedings of the 3rd International Conference on Hybrid Human-Artificial Intelligence, HHAI-WS 2024, CEUR-WS, 1-8, 2024. CEUR-WS.
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Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3386-3394, 2024. International Joint Conferences on Artificial Intelligence.
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Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency (Extended Abstract)
In Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning, NMR 2024, CEUR-WS, 183-186, 2024. CEUR-WS.
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Marcos E. González Laffitte, Peter F Stadler
Progressive Multiple Alignment of Graphs
In Algorithms, Multidisciplinary Digital Publishing Institute (MDPI), volume 17, 2024. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/a17030116
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Marco Gustav, Nic G. Reitsam, Zunamys I. Carrero, Chiara M. L. Loeffler, Marko van Treeck, Tanwei Yuan, Nicholas P. West, Philip Quirke, Titus J. Brinker, Hermann Brenner, Loëtitia Favre, Bruno Märkl, Albrecht Stenzinger, Alexander Brobeil, Michael Hoffmeister, Julien Calderaro, Anaïs Pujals, Jakob Nikolas Kather
Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology
In npj Precision Oncology, Nature Research, volume 8, 2024. Nature Research. 10.1038/s41698-024-00592-z
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Grover E.C. Guzman, Peter F Stadler, André Fujita
Cavity approach for the approximation of spectral density of graphs with heterogeneous structures
In Physical Review E, American Physical Society, volume 109, 2024. American Physical Society. 10.1103/PhysRevE.109.034303
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Tianyu Han, Sven Nebelung, Firas Khader, Tianci Wang, Gustav Anton Müller-Franzes, Christiane Kuhl, Sebastian Foersch, Jens Kleesiek, Christoph Haarburger, Keno Bressem, Jakob Nikolas Kather, Daniel Truhn
Medical large language models are susceptible to targeted misinformation attacks
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01282-7
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Tianyu Han, Laura Žigutytė, Luisa Huck, Marc Sebastian Huppertz, Robert Siepmann, Yossi Gandelsman, Christian Blüthgen, Firas Khader, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Reconstruction of patient-specific confounders in AI-based radiologic image interpretation using generative pretraining
In Cell Reports Medicine, Cell Press, volume 5, 2024. Cell Press. 10.1016/j.xcrm.2024.101713
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Philipp Hanisch, Markus Krötzsch
Chase Termination Beyond Polynomial Time
In Proc. ACM Manag. Data, ACM, volume 2(2), 2024. ACM. 10.1145/3651594
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Katherine J Hewitt, Isabella Wiest, Zunamys I. Carrero, Laura Bejan, Thomas O. Millner, Sebastian Brandner, Jakob Nikolas Kather
Large language models as a diagnostic support tool in neuropathology
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 10, 2024. John Wiley and Sons Inc. 10.1002/2056-4538.70009
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Lars Hilgers, Narmin Ghaffari Laleh, Nicholas P. West, Alice Westwood, Katherine J Hewitt, Philip Quirke, Heike I. Grabsch, Zunamys I. Carrero, Emylou Matthaei, Chiara M. L. Loeffler, Titus J. Brinker, Tanwei Yuan, Hermann Brenner, Alexander Brobeil, Michael Hoffmeister, Jakob Nikolas Kather
Automated curation of large-scale cancer histopathology image datasets using deep learning
In Histopathology, John Wiley and Sons Inc, volume 84, 1139-1153, 2024. John Wiley and Sons Inc. 10.1111/his.15159
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Hanna Hoffmann, Isabel Funke, Philipp Peters, Danush Kumar Venkatesh, Jan Egger, Dominik Rivoir, Rainer Röhrig, Frank Hölzle, Sebastian Bodenstedt, Marie-Christin Willemer, Stefanie Speidel, Behrus Puladi
AIxSuture: vision-based assessment of open suturing skills
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 1045-1052, 2024. Springer. 10.1007/s11548-024-03093-3
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Hernan Inojosa, Isabel Voigt, Judith Wenk, Dyke Ferber, Isabella Wiest, Dario Antweiler, Eva Weicken, Stephen Gilbert, Jakob Nikolas Kather, Katja Akgün, Tjalf Ziemssen
Integrating large language models in care, research, and education in multiple sclerosis management
In Multiple Sclerosis Journal, SAGE Publications Ltd, volume 30, 1392-1401, 2024. SAGE Publications Ltd. 10.1177/13524585241277376
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Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: A Scalable and Versatile Datalog Engine
In Proceedings of the 5th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2024, CEUR-WS, 43-47, 2024. CEUR-WS.
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Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: Your Friendly and Versatile Rule Reasoning Toolkit
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 743-754, 2024. AAAI.
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Charvi Jain, Sahar Vahdati, Nandu Gopan, Ivo F. Sbalzarini, Jens Lehmann
Evaluating Large Language Model Literature Reviews in Interdisciplinary Science: A Systems Biology Perspective
In Proceedings of the Joint of Posters, Demos, Workshops, and Tutorials of the 24th International Conference on Knowledge Engineering and Knowledge Management, EKAW-PDWT 2024, CEUR-WS, 2024. CEUR-WS.
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Xiaofeng Jiang, Michael Hoffmeister, Hermann Brenner, Hannah S. Muti, Tanwei Yuan, Sebastian Foersch, Nicholas P. West, Alexander Brobeil, Jitendra Jonnagaddala, Nicholas Hawkins, Robyn L. Ward, Titus J. Brinker, Oliver Lester Saldanha, Jia Ke, Wolfram Müller, Heike I. Grabsch, Philip Quirke, Daniel Truhn, Jakob Nikolas Kather
End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study
In The Lancet Digital Health, Elsevier Ltd, volume 6, e33-e43, 2024. Elsevier Ltd. 10.1016/S2589-7500(23)00208-X
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Caleb A. H. Jones, Benjamin P. Brown, Daniel C. Schultz, Julie Engers, Valerie M. Kramlinger, Jens Meiler, Craig W. Lindsley
Computer-Aided Design and Biological Evaluation of Diazaspirocyclic D4R Antagonists
In ACS Chemical Neuroscience, American Chemical Society, volume 15, 2396-2407, 2024. American Chemical Society. 10.1021/acschemneuro.4c00086
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Jonas Karge, Sebastian Rudolph, Juliette-Michelle Burkhardt, Dominik Rusovac
To Lead or to be Led: A Generalized Condorcet Jury Theorem under Dependence
In Proceedings of the 23rd International Conference on Autonomous Agents and Multiagent Systems, AAMAS 2024, International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS), 983-991, 2024. International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS).
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Jakob Nikolas Kather, Dyke Ferber, Isabella Wiest, Stephen Gilbert, Daniel Truhn
Large language models could make natural language again the universal interface of healthcare
In Nature Medicine, Nature Research, volume 30, 2708-2710, 2024. Nature Research. 10.1038/s41591-024-03199-w
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Kathlen Kohn, Guido Montúfar, Vahid Shahverdi, Matthew Trager
Function Space and Critical Points of Linear Convolutional Networks
In SIAM Journal on Applied Algebra and Geometry, Society for Industrial and Applied Mathematics Publications, volume 8, 333-362, 2024. Society for Industrial and Applied Mathematics Publications. 10.1137/23M1565504
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Fiona R. Kolbinger, Gregory P. Veldhuizen, Jiefu Zhu, Daniel Truhn, Jakob Nikolas Kather
Reporting guidelines in medical artificial intelligence: a systematic review and meta-analysis
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00492-0
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D. Kosakin, S. Obiedkov, E. Rakhilina, I. Smirnov, A. Vyrenkova, E. Zalivina
Russian Learner Corpus: Towards Error-Cause Annotation for L2 Russian
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 14240-14258, 2024. European Language Resources Association (ELRA).
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Charlotte Langer
Decision-making power and responsibility in an automated administration
In Discover Artificial Intelligence, Springer Nature, volume 4, 2024. Springer Nature. 10.1007/s44163-024-00152-1
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Jens Lehmann, Dhananjay Bhandiwad, Preetam Gattogi, Sahar Vahdati
Beyond Boundaries: A Human-like Approach for Question Answering over Structured and Unstructured Information Sources
In Transactions of the Association for Computational Linguistics, MIT Press Journals, volume 12, 786-802, 2024. MIT Press Journals. 10.1162/tacl_a_00671
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Fabian Liessmann, Lukas von Bredow, Jens Meiler, Ines Liebscher
Targeting adhesion G protein-coupled receptors. Current status and future perspectives
In Structure, Cell Press, volume 32, 2188-2205, 2024. Cell Press. 10.1016/j.str.2024.10.022
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Yunchao Yunchao Lance Liu, Ha Dong, Xin Wang, Rocco Moretti, Yu Wang, Zhaoqian Su, Jiawei Gu, Bobby Bodenheimer, C. David Weaver, Jens Meiler, Tyler Derr
WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking
In Proceedings of the 38th Conference on Neural Information Processing Systems, NeurIPS 2024, Neural information processing systems foundation, 2024. Neural information processing systems foundation.
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Chiara M. L. Loeffler, Omar S. M. El Nahhas, Hannah S. Muti, Zunamys I. Carrero, Tobias Seibel, Marko van Treeck, Didem Cifci, Marco Gustav, Kevin Bretz, Nadine T. Gaisa, Kjong-Van Lehmann, Alexandra Leary, Pier Selenica, Jorge S. Reis-Filho, Nadina Ortiz-Bruechle, Jakob Nikolas Kather
Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types
In BMC Biology, BioMed Central Ltd, volume 22, 2024. BioMed Central Ltd. 10.1186/s12915-024-02022-9
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Carsten Lutz, Quentin Manière
Adding Circumscription to Decidable Fragments of First-Order Logic: A Complexity Rollercoaster
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 531-541, 2024. AAAI.
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Carsten Lutz, Lukas Schulze
Description Logics with Abstraction and Refinement: From ALC to EL
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 542-552, 2024. AAAI.
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Tim S. Lyon, Jonas Karge
Constructive Interpolation and Concept-Based Beth Definability for Description Logics via Sequents
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3484-3492, 2024. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2024/386
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Lucas Fabian Naumann, Jannik Irmai, Shengxian Zhao, Bjoern Andres
Box Facets and Cut Facets of Lifted Multicut Polytopes
In Proceedings of the 41st International Conference on Machine Learning, ICML 2024, ML Research Press, 37365-37375, 2024. ML Research Press.
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Anna Niarakis, Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak, Kristin Reiche, María Rodríguez Martínez, Liesbet Geris, Luiz Ladeira, Lorenzo Veschini, Michael L. Blinov, Francesco Messina, Luis L. Fonseca, Sandra Ferreira, Arnau Montagud, Vincent Noël, Malvina Marku, Eirini Tsirvouli, Marcella M. Torres, Leonard A. Harris, T.J. Sego, Chase Cockrell, Amanda E. Shick, Hasan Balci, Albin Salazar, Kinza Rian, Ahmed Abdelmonem Hemedan, Marina Esteban-Medina, Bernard Staumont, Esteban Hernandez-Vargas, Shiny Martis B, Alejandro Madrid-Valiente, Panagiotis Karampelesis, Luis Sordo Vieira, Pradyumna Harlapur, Alexander Kulesza, Niloofar Nikaein, Winston Garira, Rahuman S. Malik Sheriff, Juilee Thakar, Van Du T. Tran, Jose Carbonell-Caballero, Soroush Safaei, Alfonso Valencia, Andrei Zinovyev, James A. Glazier
Immune digital twins for complex human pathologies: applications, limitations, and challenges
In npj Systems Biology and Applications, Nature Research, volume 10, 2024. Nature Research. 10.1038/s41540-024-00450-5
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Jan M. Niehues, Gustav Anton Müller-Franzes, Yoni Schirris, Sophia J. Wagner, Michael Jendrusch, Matthias Kloor, Alexander T. Pearson, Hannah S. Muti, Katherine J Hewitt, Gregory P. Veldhuizen, Laura Žigutytė, Daniel Truhn, Jakob Nikolas Kather
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance
In Computers in Biology and Medicine, Elsevier Ltd, volume 175, 2024. Elsevier Ltd. 10.1016/j.compbiomed.2024.108410
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S. Obiedkov, Barış Sertkaya
Probably Approximately Correct Ontology Completion with pacco (Extended Abstract)
In Proceedings of the 37th International Workshop on Description Logics, DL 2024, CEUR-WS, 2024. CEUR-WS.
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Iuliia Ozerova, Jörg Fallmann, Mario Mörl, Matthias Bernt, Sonja J. Prohaska, Peter F Stadler
Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution
In Genome Biology and Evolution, Oxford University Press, volume 16, 2024. Oxford University Press. 10.1093/gbe/evae232
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Raquel Perez-Lopez, Narmin Ghaffari Laleh, Faisal Mahmood, Jakob Nikolas Kather
A guide to artificial intelligence for cancer researchers
In Nature Reviews Cancer, Nature Research, volume 24, 427-441, 2024. Nature Research. 10.1038/s41568-024-00694-7
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Antonia Sophia Peter, Dieter S. Hoffmann, Johannes Klier, Christina M. Lange, Johanna Moeller, Victoria Most, Christina K. Wüst, Max Beining, Sevilay Gülesen, Hannes Junker, Birke Brumme, Torben Schiffner, Jens Meiler, Clara T. Schoeder
Strategies of rational and structure-driven vaccine design for Arenaviruses
In Infection, Genetics and Evolution, Elsevier B.V., volume 123, 2024. Elsevier B.V.. 10.1016/j.meegid.2024.105626
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Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob L. Andersen, Rolf Fagerberg, Peter F Stadler
Reaction rebalancing: a novel approach to curating reaction databases
In Journal of Cheminformatics, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13321-024-00875-4
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Michelle Philipp, Christopher Moth, Nikola Ristic, Johanna K S Tiemann, Florian Seufert, Aleksandra Panfilova, Jens Meiler, Peter W. Hildebrand, Amelie Stein, Daniel Wiegreffe, René Staritzbichler
MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts
In Nucleic Acids Research, Oxford University Press, volume 52, W132-W139, 2024. Oxford University Press. 10.1093/nar/gkae301
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Nic G. Reitsam, Veselin Grozdanov, Chiara Maria Lavinia Löffler, Hannah S. Muti, Bianca Grosser, Jakob Nikolas Kather, Bruno Märkl
Novel biomarker SARIFA in colorectal cancer: highly prognostic, not genetically driven and histologic indicator of a distinct tumor biology
In Cancer Gene Therapy, Springer Nature, volume 31, 207-216, 2024. Springer Nature. 10.1038/s41417-023-00695-y
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Nic G. Reitsam, Bianca Grosser, David F. Steiner, Veselin Grozdanov, Ellery Wulczyn, Vincenzo L’Imperio, Markus Plass, Heimo Müller, Kurt Zatloukal, Hannah S. Muti, Jakob Nikolas Kather, Bruno Märkl
Converging deep learning and human-observed tumor-adipocyte interaction as a biomarker in colorectal cancer
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00589-6
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Nic G. Reitsam, Johanna Sophie Enke, Kien Vu Trung, Bruno Märkl, Jakob Nikolas Kather
Artificial Intelligence in Colorectal Cancer: From Patient Screening over Tailoring Treatment Decisions to Identification of Novel Biomarkers
In Digestion, S. Karger AG, volume 105, 331-344, 2024. S. Karger AG. 10.1159/000539678
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Dominik Rusovac, Markus Hecher, Martin Gebser, Sarah Alice Gaggl, Johannes K. Fichte
Navigating and Querying Answer Sets: How Hard Is It Really and Why?
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 642-653, 2024. AAAI.
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Farid Saberi-Movahed, Bitasta Biswas, Prayag Tiwari, Jens Lehmann, Sahar Vahdati
Deep Nonnegative Matrix Factorization with Joint Global and Local Structure Preservation
In Expert Systems with Applications, Elsevier Ltd, volume 249, 2024. Elsevier Ltd. 10.1016/j.eswa.2024.123645
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Anahy Santiago Arguello, Guillaume E. Scholz, Peter F Stadler
Core Potentials: The Consensus Segmentation Conjecture
In Mathematics in Computer Science, Birkhauser, volume 18, 2024. Birkhauser. 10.1007/s11786-024-00593-y
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Stephanie Schiedermair
Between Efficiency and Loss of Control: The Use of Artificial Intelligence by the Public Administration in the Mirror of the Law
In Quo vadis Artificial Intelligence in Nuclear Waste Management?, Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.), 16-18, 2024. Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.).
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Stephanie Schiedermair
The Civil Service and Artificial Intelligence
In The Handbook of Civil Service in Europe, Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.), 2024. Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.).
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Richard Schroedter, Adnan Haidar, Ronald Tetzlaff
Fault Impact Map for Memristive Crossbar Neural Networks
In Proceedings of the 13th International Conference on Modern Circuits and Systems Technologies, MOCAST 2024, IEEE, 2024. IEEE. 10.1109/MOCAST61810.2024.10615515
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Jonas Schulz, Clemens Dubslaff, Patrick Seeling, Shu-Chen Li, Stefanie Speidel, Frank H. P. Fitzek
Negative Latency in the Tactile Internet as Enabler for Global Metaverse Immersion
In IEEE Network, IEEE, volume 38, 167-173, 2024. IEEE. 10.1109/MNET.2024.3375522
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Jonas Schulz, Susu Hu, Stefanie Speidel, Patrick Seeling, Frank H. P. Fitzek
Negative Latency in Computer Vision: A Key to Efficient Edge Offloading
In Proceedings of the 2024 IEEE Global Communications Conference, GLOBECOM 2024, IEEE, 3110-3115, 2024. IEEE. 10.1109/GLOBECOM52923.2024.10901398
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Sudharshan Suresh, Haozhi Qi, Tingfan Wu, Taosha Fan, Luis Pineda, Mike Lambeta, Jitendra Malik, Mrinal Kalakrishnan, Roberto Calandra, Michael Kaess, Joseph Ortiz, Mustafa Mukadam
NeuralFeels with neural fields: Visuotactile perception for in-hand manipulation
In Science Robotics, American Association for the Advancement of Science, volume 9, 2024. American Association for the Advancement of Science. 10.1126/scirobotics.adl0628
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Yidan Tang, Rocco Moretti, Jens Meiler
Recent Advances in Automated Structure-Based De Novo Drug Design
In Journal of Chemical Information and Modeling, American Chemical Society, volume 64, 1794-1805, 2024. American Chemical Society. 10.1021/acs.jcim.4c00247
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Daniel Truhn, Chiara M. L. Loeffler, Gustav Anton Müller-Franzes, Sven Nebelung, Katherine J Hewitt, Sebastian Brandner, Keno Bressem, Sebastian Foersch, Jakob Nikolas Kather
Extracting structured information from unstructured histopathology reports using generative pre-trained transformer 4 (GPT-4)
In Journal of Pathology, John Wiley and Sons Ltd, volume 262, 310-319, 2024. John Wiley and Sons Ltd. 10.1002/path.6232
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Gia-Bao Truong, Thanh-An Pham, Van-Thinh To, Hoang-Son Lai Le, Phuoc-Chung Van Nguyen, The-Chuong Trinh, Tieu-Long Phan, Tuyen Ngoc Truong
Discovery of Vascular Endothelial Growth Factor Receptor 2 Inhibitors Employing Junction Tree Variational Autoencoder with Bayesian Optimization and Gradient Ascent
In ACS Omega, American Chemical Society, volume 9, 47180-47193, 2024. American Chemical Society. 10.1021/acsomega.4c07689
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Michaela Unger, Jakob Nikolas Kather
A systematic analysis of deep learning in genomics and histopathology for precision oncology
In BMC Medical Genomics, BioMed Central Ltd, volume 17, 2024. BioMed Central Ltd. 10.1186/s12920-024-01796-9
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Michaela Unger, Jakob Nikolas Kather
Deep learning in cancer genomics and histopathology
In Genome Medicine, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13073-024-01315-6
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Brinda Vallat, Benjamin M. Webb, John D. Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei, Ezra Peisach, Arthur Zalevsky, Jared Sagendorf, Hongsuda Tangmunarunkit, Serban Voinea, Monica Sekharan, Jian Yu, Alexander A.M.J.J. Bonvin, Frank DiMaio, Gerhard Hummer, Jens Meiler, Emad Tajkhorshid, Thomas E. Ferrin, Catherine L. Lawson, Alexander Leitner, Juri Rappsilber, Claus A.M. Seidel, Cy M. Jeffries, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar, Torsten Schwede, Jill Trewhella, Carl Kesselman, Helen M. Berman, Andrej Sali
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods
In Journal of Molecular Biology, Academic Press, volume 436, 2024. Academic Press. 10.1016/j.jmb.2024.168546
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Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Fiona R. Kolbinger, Marius Distler, Jürgen Weitz, Stefanie Speidel
Exploring semantic consistency in unpaired image translation to generate data for surgical applications
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 985-993, 2024. Springer. 10.1007/s11548-024-03079-1
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Sarah von Löhneysen, Mario Mörl, Peter F Stadler
Limits of experimental evidence in RNA secondary structure prediction
In Frontiers in Bioinformatics, Frontiers Media SA, volume 4, 2024. Frontiers Media SA. 10.3389/fbinf.2024.1346779
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Ran Wei, Nathan Lambert, Anthony McDonald, Alfredo Garcia, Roberto Calandra
A Unified View on Solving Objective Mismatch in Model-Based Reinforcement Learning
In Transactions on Machine Learning Research, Transactions on Machine Learning Research, volume 2024, 2024. Transactions on Machine Learning Research.
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Isabella Wiest, Dyke Ferber, Jiefu Zhu, Marko van Treeck, Sonja K. Meyer, Radhika Juglan, Zunamys I. Carrero, Daniel Paech, Jens Kleesiek, Matthias P. Ebert, Daniel Truhn, Jakob Nikolas Kather
Privacy-preserving large language models for structured medical information retrieval
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01233-2
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Isabella Wiest, Falk Gerrik Verhees, Dyke Ferber, Jiefu Zhu, Michael Bauer, Ute Lewitzka, Andrea Pfennig, Pavol Mikolas, Jakob Nikolas Kather
Detection of suicidality from medical text using privacy-preserving large language models
In British Journal of Psychiatry, Cambridge University Press, volume 225, 532-537, 2024. Cambridge University Press. 10.1192/bjp.2024.134
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Jiajing Zhang, Lyuqiao Zhong, Yushan Yang, Jonas Schulz, Giang T. Nguyen, Frank H. P. Fitzek
LEON: Simulating Handover Integrating Non-Terrestrial Networks with 5G and beyond
In Proceedings of the 10th Workshop on Micro Aerial Vehicle Networks, Systems, and Applications, DroNet 2024, ACM, 43-48, 2024. ACM. 10.1145/3661810.3663470
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Laura Žigutytė, Thomas Sorz-Nechay, Jan Clusmann, Jakob Nikolas Kather
Use of artificial intelligence for liver diseases: A survey from the EASL congress 2024
In JHEP Reports, Elsevier B.V., volume 6, 2024. Elsevier B.V.. 10.1016/j.jhepr.2024.101209
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Dörthe Arndt, Stephan Mennicke
Notation3 as an Existential Rule Language
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 70-85, 2023. Springer. 10.1007/978-3-031-45072-3_5
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Martin Bogdan
Is Boredom an Indicator on the way to Singularity of Artificial Intelligence? Hypotheses as Thought-Provoking Impulse
In Proceedings of the ESANN 2023, European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, 2023. Computational Intelligence and Machine Learning. 10.14428/esann/2023.ES2023-89
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Pierre Bréchet, Katerina Papagiannouli, Jing An, Guido Montúfar
Critical Points and Convergence Analysis of Generative Deep Linear Networks Trained with Bures-Wasserstein Loss
In Proceedings of the 40th International Conference on Machine Learning, ICML 2023, ML Research Press, 3106-3147, 2023. ML Research Press.
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Julien Calderaro, Narmin Ghaffari Laleh, Qinghe Zeng, Pascale Maille, Loëtitia Favre, Anaïs Pujals, Christophe Klein, Céline Bazille, Lara R. Heij, Arnaud Uguen, Tom Luedde, Luca Di Tommaso, Aurélie Beaufrère, Augustin Chatain, Delphine Gastineau, Cong Trung Nguyen, Hiep Nguyen-Canh, Khuyen Nguyen Thi, Viviane Gnemmi, Rondell P. Graham, Frédéric Charlotte, Dominique Wendum, Mukul Vij, Daniela S. Allende, Federico Aucejo, Alba Diaz, Benjamin Rivière, Astrid Herrero, Katja Evert, Diego Francesco Calvisi, Jérémy Augustin, Wei Qiang Leow, Howard Ho Wai Leung, Emmanuel Boleslawski, Mohamed Rela, Arnaud François, Anthony Wing-Hung Cha, Alejandro Forner, Maria Reig, Manon Allaire, Olivier Scatton, Denis Chatelain, Camille Boulagnon-Rombi, Nathalie Sturm, Benjamin Menahem, Eric Frouin, David Tougeron, Christophe Tournigand, Emmanuelle Kempf, Haeryoung Kim, Massih Ningarhari, Sophie Michalak-Provost, Purva Gopal, Raffaele Brustia, Eric Vibert, Kornelius Schulze, Darius F. Rüther, Sören A. Weidemann, Rami Rhaiem, Jean-Michel Pawlotsky, Xuchen Zhang, Alain Luciani, Sébastien Mulé, Alexis Laurent, Giuliana Amaddeo, Hélène Regnault, Eleonora De Martin, Christine Sempoux, Pooja Navale, Maria Westerhoff, Regina Cheuk-Lam Lo, Jan Bednarsch, Annette Gouw, Catherine Guettier, Marie Lequoy, Kenichi Harada, Pimsiri Sripongpun, Poowadon Wetwittayaklang, Nicolas Loménie, Jarukit Tantipisit, Apichat Kaewdech, Jeanne Shen, Valérie Paradis, Stefano Caruso, Jakob Nikolas Kather
Deep learning-based phenotyping reclassifies combined hepatocellular-cholangiocarcinoma
In Nature Communications, Nature Research, volume 14, 2023. Nature Research. 10.1038/s41467-023-43749-3
Intelligent Medical Devices Journal Publication
Balder ten Cate, Maurice Funk, Jean Christoph Jung, Carsten Lutz
SAT-Based PAC Learning of Description Logic Concepts
In Proceedings of the 32nd International Joint Conference on Artificial Intelligence, IJCAI 2023, International Joint Conferences on Artificial Intelligence, 3347-3355, 2023. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2023/373
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Jan Clusmann, Fiona R. Kolbinger, Hannah S. Muti, Zunamys I. Carrero, Jan-Niklas Eckardt, Narmin Ghaffari Laleh, Chiara Maria Lavinia Löffler, Sophie-Caroline Schwarzkopf, Michaela Unger, Gregory P. Veldhuizen, Sophia J. Wagner, Jakob Nikolas Kather
The future landscape of large language models in medicine
In Communications Medicine, Springer Nature, volume 3, 2023. Springer Nature. 10.1038/s43856-023-00370-1
Intelligent Medical Devices Journal Publication
Edgar M.G. Dorausch, Daniel Swist, Moritz Herzog, Christoph Statz, Julian Kober, Cornelius Kühnöl, Tönnis Trittler, Nora Martens, Franz Brinkmann, Jochen Hampe, Gerhard Fettweis
Adoption and evaluation of a multistatic Fourier-based synthetic aperture radar method for ultrasound imaging
In Proceedings of the Medical Imaging 2023: Ultrasonic Imaging and Tomography, SPIE, 2023. SPIE. 10.1117/12.2653898
Intelligent Medical Devices Conference Publication
Stefan Ellmauthaler, Lukas Gerlach
ADF-BDD.DEV: Insights to undecided Statements in Abstract Dialectical Frameworks
In Proceedings of the 7th Workshop on Advances in Argumentation in Artificial Intelligence, AI^3 2023, CEUR-WS, 2023. CEUR-WS.
Composite AI Conference Publication
Maurice Funk, Simon Hosemann, Jean Christoph Jung, Carsten Lutz
Towards Ontology Construction with Language Models
In Proceedings of the 1st Workshop on Knowledge Base Construction from Pre-Trained Language Models and the 2nd Challenge on Language Models for Knowledge Base Construction, KBC-LM + LM-KBC 2023, CEUR-WS, 2023. CEUR-WS.
Composite AI Conference Publication
Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
In Proceedings of the 36th International Workshop on Description Logics, DL 2023, CEUR-WS, 2023. CEUR-WS.
Composite AI Conference Publication
Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
In Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023, AAAI Press, 6372-6379, 2023. AAAI Press. 10.1609/aaai.v37i5.25784
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Lukas Gerlach, David Carral
Do Repeat Yourself: Understanding Sufficient Conditions for Restricted Chase Non-Termination
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 301-310, 2023. AAAI. 10.24963/kr.2023/30
Composite AI Conference Publication
Larry González, Alex Ivliev, Markus Krötzsch, Stephan Mennicke
Efficient Dependency Analysis for Existential Rules
In Proceedings of the 15th Alberto Mendelzon International Workshop on Foundations of Data Management, AMW 2023, CEUR-WS, 2023. CEUR-WS.
Composite AI Conference Publication
Katherine J Hewitt, Chiara Maria Lavinia Löffler, Hannah S. Muti, Anna Sophie Berghoff, Christian Eisenlöffel, Marko van Treeck, Zunamys I. Carrero, Omar S. M. El Nahhas, Gregory P. Veldhuizen, Sophie Weil, Oliver Lester Saldanha, Laura Bejan, Thomas O. Millner, Sebastian Brandner, Sascha Brückmann, Jakob Nikolas Kather
Direct image to subtype prediction for brain tumors using deep learning
In Neuro-Oncology Advances, Oxford University Press, volume 5, 2023. Oxford University Press. 10.1093/noajnl/vdad139
Intelligent Medical Devices Journal Publication
Alex Ivliev, Stefan Ellmauthaler, Lukas Gerlach, Maximilian Marx, Matthias Meißner, Simon Meusel, Markus Krötzsch
Nemo: First Glimpse of a New Rule Engine
In Proceedings of the 39th International Conference on Logic Programming, ICLP 2023, Open Publishing Association, 333-335, 2023. Open Publishing Association. 10.4204/EPTCS.385.35
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Xiaofeng Jiang, Hengyu Zhao, Oliver Lester Saldanha, Sven Nebelung, Christiane Kuhl, Iakovos Amygdalos, Sven Arke Lang, Xiaojian Wu, Xiaochun Meng, Daniel Truhn, Jakob Nikolas Kather, Jia Ke
An MRI Deep Learning Model Predicts Outcome in Rectal Cancer
In Radiology, Radiological Society of North America Inc., volume 307, 2023. Radiological Society of North America Inc.. 10.1148/radiol.222223
Intelligent Medical Devices Journal Publication
Firas Khader, Gustav Anton Müller-Franzes, Soroosh Tayebi Arasteh, Tianyu Han, Christoph Haarburger, Maximilian Schulze-Hagen, Philipp Schad, Sandy Engelhardt, Bettina Baeßler, Sebastian Foersch, Johannes Stegmaier, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Denoising diffusion probabilistic models for 3D medical image generation
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-34341-2
Intelligent Medical Devices Journal Publication
Konstantin Klemm, Anita Mehta, Peter F Stadler
Optimisation via encodings: a renormalisation group perspective
In Journal of Physics A: Mathematical and Theoretical, Institute of Physics, volume 56, 2023. Institute of Physics. 10.1088/1751-8121/ad07c9
AI Methods for Health Journal Publication
Jens Lehmann, Preetam Gattogi, Dhananjay Bhandiwad, Sébastien Ferré, Sahar Vahdati
Language Models as Controlled Natural Language Semantic Parsers for Knowledge Graph Question Answering
In Proceedings of the 26th European Conference on Artificial Intelligence, ECAI 2023, IOS Press BV, 1348-1356, 2023. IOS Press BV. 10.3233/FAIA230411
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Fabian Liessmann, Georg Künze, Jens Meiler
Improving the Modeling of Extracellular Ligand Binding Pockets in RosettaGPCR for Conformational Selection
In International Journal of Molecular Sciences, Multidisciplinary Digital Publishing Institute (MDPI), volume 24, 2023. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/ijms24097788
AI Methods for Health Journal Publication
Carsten Lutz, Quentin Manière, Robin Nolte
Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 36th International Workshop on Description Logics, DL 2023, CEUR-WS, 2023. CEUR-WS.
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Carsten Lutz, Lukas Schulze
Description Logics with Abstraction and Refinement
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 492-501, 2023. AAAI. 10.24963/kr.2023/48
Composite AI Conference Publication
Carsten Lutz, Quentin Manière, Robin Nolte
Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 482-491, 2023. AAAI. 10.24963/kr.2023/47
Composite AI Conference Publication
Kortney Melancon, Palina Pliushcheuskaya, Jens Meiler, Georg Künze
Targeting ion channels with ultra-large library screening for hit discovery
In Frontiers in Molecular Neuroscience, Frontiers Media SA, volume 16, 2023. Frontiers Media SA. 10.3389/fnmol.2023.1336004
AI Methods for Health Journal Publication
Johannes Müller, Guido Montúfar
Geometry and convergence of natural policy gradient methods
In Information Geometry, Springer, volume 7, 485-523, 2023. Springer. 10.1007/s41884-023-00106-z
Composite AI Journal Publication
Evelyn Muschter, Jonas Schulz, Máté Tömösközi, Leonie Herbst, Lena Küssel, Merve Sefunç, Stefan Holtzhausen, Stefanie Speidel, Frank H. P. Fitzek, Shu-Chen Li
Coming in handy: CeTI-Age — A comprehensive database of kinematic hand movements across the lifespan
In Scientific Data, Nature Research, volume 10, 2023. Nature Research. 10.1038/s41597-023-02738-3
Intelligent Medical Devices Composite AI Journal Publication
Hannah S. Muti, Christoph Röcken, Hans-Michael Behrens, Chiara Maria Lavinia Löffler, Nic G. Reitsam, Bianca Grosser, Bruno Märkl, Daniel E. Stange, Xiaofeng Jiang, Gregory P. Veldhuizen, Daniel Truhn, Matthias P. Ebert, Heike I. Grabsch, Jakob Nikolas Kather
Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology: a retrospective multicentric study
In European Journal of Cancer, Elsevier Ltd, volume 194, 2023. Elsevier Ltd. 10.1016/j.ejca.2023.113335
Intelligent Medical Devices Journal Publication
Jan M. Niehues, Philip Quirke, Nicholas P. West, Heike I. Grabsch, Marko van Treeck, Yoni Schirris, Gregory P. Veldhuizen, Gordon G.A. Hutchins, Susan D. Richman, Sebastian Foersch, Titus J. Brinker, Junya Fukuoka, Andrey Bychkov, Wataru Uegami, Daniel Truhn, Hermann Brenner, Alexander Brobeil, Michael Hoffmeister, Jakob Nikolas Kather
Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study
In Cell Reports Medicine, Cell Press, volume 4, 2023. Cell Press. 10.1016/j.xcrm.2023.100980
Intelligent Medical Devices Journal Publication
Raquel Perez-Lopez, Jorge S. Reis-Filho, Jakob Nikolas Kather
A framework for artificial intelligence in cancer research and precision oncology
In npj Precision Oncology, Nature Research, volume 7, 2023. Nature Research. 10.1038/s41698-023-00383-y
Intelligent Medical Devices Journal Publication
Jorge S. Reis-Filho, Jakob Nikolas Kather
Overcoming the challenges to implementation of artificial intelligence in pathology
In Journal of the National Cancer Institute, Oxford University Press, volume 115, 608-612, 2023. Oxford University Press. 10.1093/jnci/djad048
Intelligent Medical Devices Journal Publication
Oliver Lester Saldanha, Hannah S. Muti, Heike I. Grabsch, Rupert Langer, Bastian Dislich, Meike Kohlruss, Gisela Keller, Marko van Treeck, Katherine J Hewitt, Fiona R. Kolbinger, Gregory P. Veldhuizen, Peter Boor, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning
In Gastric Cancer, Springer, volume 26, 264-274, 2023. Springer. 10.1007/s10120-022-01347-0
Intelligent Medical Devices Journal Publication
Stephanie Schiedermair
Il diritto all’oblio tra Lussemburgo, Strasburgo, Karlsruhe e il mondo intero
In Rivista di studia documentazione sull´integrazione europea 2/2023, numero speciale, , 2023.
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Stephanie Schiedermair
Kommentierungen von §§ 1, 2
In Datenschutzdurchführungsgesetz Sachsen, 2023. Schiedermair (Hrsg.).
Societal Framework for AI Other
Stephanie Schiedermair
Kommentierungen von Art. 4 (26), 50, 68-76, 92, 93, 96, 97
In General Data Protection Regulation, 2023. Spiecker gen. Döhmann/Papakonstantinou/Hornung/de Hert (eds.).
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Stephanie Schiedermair
Datenschutzdurchführungsgesetz Sachsen
In Datenschutzdurchführungsgesetz Sachsen, 2023. Schiedermair (Hrsg.).
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Stephanie Schiedermair
El derecho al olvido en Luxemburgo, Estrasburgo, Karlsruhe y el mundo
In Derechos Fundmamentales y Democracia en el Constitucionalismo Digital, Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.), 587-607, 2023. Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.).
Societal Framework for AI Journal Publication
Stephanie Schiedermair, Johannes Weil
Zwischen Effizienz und Kontrollverlust: Der Einsatz von Künstlicher Intelligenz durch die Verwaltung im Spiegel des Rechts
In Quo Vadis Künstliche Intelligenz in der nuklearen Entsorgung?, Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.), 18-22, 2023. Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.).
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Carolin Schimmelpfennig, Michael Rade, Susanne Füssel, Dennis Löffler, Conny Blumert, Catharina Bertram, Angelika Borkowetz, Dominik J. Otto, Sven-Holger Puppel, Pia Hönscheid, Ulrich Sommer, Gustavo B. Baretton, Ulrike Köhl, Manfred Wirth, Christian Thomas, Friedemann Horn, Markus Kreuz, Kristin Reiche
Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer
In BMC Cancer, BioMed Central Ltd, volume 23, 2023. BioMed Central Ltd. 10.1186/s12885-023-11019-6
AI Methods for Health Journal Publication
Tobias Schüler, Stephan Mennicke, Malte Lochau
Abstract Domains for Database Manipulating Processes
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 222-237, 2023. Springer. 10.1007/978-3-031-45072-3_16
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Tobias Paul Seraphin, Mark Luedde, Christoph Roderburg, Marko van Treeck, Pascal Scheider, Roman D. Buelow, Peter Boor, Sven H. Loosen, Zdenek Provaznik, Daniel Mendelsohn, Filip Berisha, Christina Magnussen, Dirk Westermann, Tom Luedde, Christoph Brochhausen, Samuel Sossalla, Jakob Nikolas Kather
Prediction of heart transplant rejection from routine pathology slides with self-supervised deep learning
In European Heart Journal - Digital Health, Oxford University Press, volume 4, 265-274, 2023. Oxford University Press. 10.1093/ehjdh/ztad016
Intelligent Medical Devices Journal Publication
Soroosh Tayebi Arasteh, Peter Isfort, Marwin Saehn, Gustav Mueller-Franzes, Firas Khader, Jakob Nikolas Kather, Christiane Kuhl, Sven Nebelung, Daniel Truhn
Collaborative training of medical artificial intelligence models with non-uniform labels
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-33303-y
Intelligent Medical Devices Journal Publication
Daniel Truhn, Christian D. Weber, Benedikt J. Braun, Keno Bressem, Jakob Nikolas Kather, Christiane Kuhl, Sven Nebelung
A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-47500-2
Intelligent Medical Devices Journal Publication
Gregory P. Veldhuizen, Christoph Röcken, Hans-Michael Behrens, Didem Cifci, Hannah S. Muti, Takaki Yoshikawa, Tomio Arai, Takashi Oshima, Patrick Tan, Matthias P. Ebert, Alexander T. Pearson, Julien Calderaro, Heike I. Grabsch, Jakob Nikolas Kather
Deep learning-based subtyping of gastric cancer histology predicts clinical outcome: a multi-institutional retrospective study
In Gastric Cancer, Springer, volume 26, 708-720, 2023. Springer. 10.1007/s10120-023-01398-x
Intelligent Medical Devices Journal Publication
Denny Vrandečić, Lydia Pintscher, Markus Krötzsch
Wikidata: The Making Of
In Proceedings of the 32nd Companion of the ACM World Wide Web Conference, WWW 2023, ACM, 615-624, 2023. ACM. 10.1145/3543873.3585579
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Sophia J. Wagner, Daniel Reisenbüchler, Nicholas P. West, Jan M. Niehues, Jiefu Zhu, Sebastian Foersch, Gregory P. Veldhuizen, Philip Quirke, Heike I. Grabsch, Piet A. van den Brandt, Gordon G.A. Hutchins, Susan D. Richman, Tanwei Yuan, Rupert Langer, Josien C.A. Jenniskens, Kelly Offermans, Wolfram Müller, Richard Gray, Stephen B. Gruber, Joel K. Greenson, Gad Rennert, Joseph D. Bonner, Daniel Schmolze, Jitendra Jonnagaddala, Nicholas Hawkins, Robyn L. Ward, Dion Morton, Matthew Seymour, Laura Magill, Marta Nowak, Jennifer Hay, Viktor H. Koelzer, David N. Church, Enric Domingo, Joanne Edwards, Bengt Glimelius, Ismail Gogenur, Andrea Harkin, Timothy Iveson, Emma Jaeger, Caroline Kelly, Rachel Kerr, Noori Maka, Hannah Morgan, Karin Oien, Clare Orange, Claire Palles, Campbell Roxburgh, Owen Sansom, Mark Saunders, Ian Tomlinson, Christian Matek, Carol Geppert, Chaolong Peng, Cheng Zhi, Xiaoming Ouyang, Jacqueline A. James, Maurice B. Loughrey, Manuel Salto-Tellez, Hermann Brenner, Michael Hoffmeister, Daniel Truhn, Julia A. Schnabel, Melanie Boxberg, Tingying Peng, Jakob Nikolas Kather
Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study
In Cancer Cell, Cell Press, volume 41, 1650-1661.e4, 2023. Cell Press. 10.1016/j.ccell.2023.08.002
Intelligent Medical Devices Journal Publication
Martin Bogdan
Learning algorithms for spiking neural networks: should one use learning algorithms from ANN/DL or neurological plausible learning? - A thought-provoking impulse
In XLIII Jornadas de Automática: libro de actas, Universidade da Coruña. Servizo de Publicacións, 201-207, 2022. Universidade da Coruña. Servizo de Publicacións. 10.17979/spudc.9788497498418.0201
AI Methods for Health Journal Publication
Ali Elhalawati, Markus Krötzsch, Stephan Mennicke
An Existential Rule Framework for Computing Why-Provenance On-Demand for Datalog
In Proceedings of the 6th International Joint Conference on Rules and Reasoning, RuleML+RR 2022, Springer, 146-163, 2022. Springer. 10.1007/978-3-031-21541-4_10
Composite AI Conference Publication
Larry González, Alex Ivliev, Markus Krötzsch, Stephan Mennicke
Efficient Dependency Analysis for Rule-Based Ontologies
In Proceedings of the 21st International Semantic Web Conference, ISWC 2022, Springer, 267-283, 2022. Springer. 10.1007/978-3-031-19433-7_16
Composite AI Conference Publication
Grover E.C. Guzman, Peter F Stadler, André Fujita
Efficient eigenvalue counts for tree-like networks
In Journal of Complex Networks, Oxford University Press, volume 10, 2022. Oxford University Press. 10.1093/comnet/cnac040
AI Methods for Health Journal Publication
Maximilian Marx, Markus Krötzsch
Tuple-Generating Dependencies Capture Complex Values
In Proceedings of the 4th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2022, CEUR-WS, 97-103, 2022. CEUR-WS.
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Stephanie Schiedermair, Mark Cole, Eva Wagner
Das Phänomen der fake news im Spiegel der Judikatur des EGMR
In Die Entfaltung von Freiheit im Rahmen des Rechts, Festschrift für Dieter Dörr zum 70. Geburtstag, 2022.
Societal Framework for AI Other
Stephanie Schiedermair, Johannes Weil
Online-Intermediäre als Träger der Meinungsfreiheit
In DÖV, , 2022.
Societal Framework for AI Journal Publication

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