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SECAI-Wissenschaftler:innen bei der Arbeit © DAAD/Nathan Dreessen

Publications in SECAI

Alessandro Pietro Aldera, Didem Cifci, Gregory P. Veldhuizen, Wan-Jung Tsai, Komala Pillay, Adam Boutall, Hermann Brenner, Michael Hoffmeister, Jakob Nikolas Kather, Raj Ramesar
Deep learning predicts microsatellite instability status in colorectal carcinoma in an ethnically heterogeneous population in South Africa
In Journal of Clinical Pathology, BMJ Publishing Group, 2025. BMJ Publishing Group. 10.1136/jcp-2025-210053
Intelligent Medical Devices Journal Publication
Kossi Amouzouvi, Yashrajsinh Chudasama, Disha Purohit, Ariam Rivas, Bowen Song, Jens Lehmann, Sahar Vahdati, Maria-Esther Vidal
SimE: A Knowledge Graph Embedding Model to Encode Self-Similar Structures Through Algebraic and Geometric Transformations
In IEEE Access, IEEE, volume 13, 74701-74719, 2025. IEEE. 10.1109/ACCESS.2025.3564130
Composite AI Journal Publication
Arun Anil, Manoj Changat, John J. Chavara, Lekshmi Kamal K-Sheela, Prasanth G. Narasimha-Shenoi, Bruno J. Schmidt, Ameera Vaheeda Shanavas, Peter F Stadler
Directed Transit Functions
In Results in Mathematics, Birkhauser, volume 80, 2025. Birkhauser. 10.1007/s00025-025-02354-0
AI Methods for Health Journal Publication
Chistel Baier, Sascha Klüppelholz, Jakob Piribauer, Robin Ziemek
Formal Quality Measures for Predictors in Markov Decision Processes
In Proceedings of the 39th Annual AAAI Conference on Artificial Intelligence, AAAI 2025, AAAI, 26760-26768, 2025. AAAI. 10.1609/aaai.v39i25.34879
Conference Publication
Christel Baier, Sascha Klüppelholz, Johannes Lehmann
Responsibility in Actor-Based Systems
In Lecture Notes in Computer Science, Springer, volume 15560 LNCS, 44-69, 2025. Springer. 10.1007/978-3-031-85134-6_3
Composite AI Journal Publication
Lea Bauer, Jonas Karge
Multi-agent Opinion Pooling by Voting for Bins: Simulations and Characterization
In Proceedings of the 22nd International Conference on Practical Applications of Agents and Multi-Agent Systems, PAAMS 2024, Springer, 49-60, 2025. Springer. 10.1007/978-3-031-70415-4_5
Composite AI Conference Publication
Lorenz Beckmann, Fabian Liessmann, Maik Icker, Dominic Rieger, Phillip Schlegel, Nicole Urban, Michael Schaefer, Jens Meiler, Clara T. Schoeder, Maik Tretbar
Identification and optimization of a small molecule inhibitor of the ovarian tumor protease of the Crimean-Congo hemorrhagic fever virus
In Bioorganic and Medicinal Chemistry, Elsevier Ltd, volume 120, 2025. Elsevier Ltd. 10.1016/j.bmc.2025.118093
AI Methods for Health Journal Publication
Jean-Paul Bereuter, Mark Enrik Geissler, Anna Klimova, Robert-Patrick Steiner, Kevin Pfeiffer, Fiona R. Kolbinger, Isabella Catharina Wiest, Hannah S. Muti, Jakob Nikolas Kather
Benchmarking Vision Capabilities of Large Language Models in Surgical Examination Questions
In Journal of Surgical Education, Elsevier Inc., volume 82, 2025. Elsevier Inc.. 10.1016/j.jsurg.2025.103442
Intelligent Medical Devices Journal Publication
Kevin M. Boehm, Omar S. M. El Nahhas, Antonio Marra, Michele Waters, Justin Jee, Lior Braunstein, Nikolaus Schultz, Pier Selenica, Hannah Y. Wen, Britta Weigelt, Evan D. Paul, Pavol Cekan, Ramona Erber, Chiara M. L. Loeffler, Elena Guerini-Rocco, Nicola Fusco, Chiara Frascarelli, Eltjona Mane, Elisabetta Munzone, Silvia Dellapasqua, Paola Zagami, Giuseppe Curigliano, Pedram Razavi, Jorge S. Reis-Filho, Fresia Pareja, Sarat Chandarlapaty, Sohrab P. Shah, Jakob Nikolas Kather
Multimodal histopathologic models stratify hormone receptor-positive early breast cancer
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-57283-x
Intelligent Medical Devices Journal Publication
Till Braun, Michael Rade, Maximilian Merz, Hanna Klepzig, Florian Große, David Fandrei, Nhu-Nguyen Pham, Markus Kreuz, Christina Katharina Kuhn, Florian Kuschel, Dennis Löffler, Jörn Meinel, Eva Heger, Viola Schweinsberg, Natali Pflug, Uwe Platzbecker, Michael Hallek, Udo Holtick, Ulrike Köhl, Christof Scheid, Kristin Reiche, Marco Herling, Tim Richardson
Multiomic profiling of T cell lymphoma after therapy with anti-BCMA CAR T cells and GPRC5D-directed bispecific antibody
In Nature Medicine, Nature Research, volume 31, 1145-1153, 2025. Nature Research. 10.1038/s41591-025-03499-9
AI Methods for Health Journal Publication
Till Braun, Florian Kuschel, Kristin Reiche, Maximilian Merz, Marco Herling
Emerging T-cell lymphomas after CAR T-cell therapy: LYMPHOMA
In Leukemia, Springer Nature, 2025. Springer Nature. 10.1038/s41375-025-02574-x
AI Methods for Health Journal Publication
Lucas Carr, Nicholas Leisegang, Thomas Meyer, Sebastian Rudolph
Non-monotonic Extensions to Formal Concept Analysis via Object Preferences
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 476-492, 2025. Springer. 10.1007/978-3-031-78255-8_28
Composite AI Conference Publication
Manoj Changat, Ameera Vaheeda Shanavas, Peter F Stadler
Transit functions and clustering systems
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1782.ec6
AI Methods for Health Journal Publication
Jan Clusmann, Dyke Ferber, Isabella Catharina Wiest, Carolin V. Schneider, Titus J. Brinker, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
Prompt injection attacks on vision language models in oncology
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-024-55631-x
Intelligent Medical Devices Journal Publication
Julia Di, Zdravko Dugonjić, Will Fu, Tingfan Wu, Romeo Mercado, Kevin Sawyer, Victoria Most, Gregg Kammerer, Stefanie Speidel, Richard E. Fan, Geoffrey Sonn, Mark R. Cutkosky, Mike Lambeta, Roberto Calandra
Using Fiber Optic Bundles to Miniaturize Vision-Based Tactile Sensors
In IEEE Transactions on Robotics, IEEE, volume 41, 62-81, 2025. IEEE. 10.1109/TRO.2024.3492375
Intelligent Medical Devices Composite AI Journal Publication
Omar S. M. El Nahhas, Marko van Treeck, Georg Wölflein, Michaela Unger, Marta Ligero, Tim Lenz, Sophia Janine Wagner, Katherine J. Hewitt, Firas Khader, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology
In Nature Protocols, Springer Nature, volume 20, 293-316, 2025. Springer Nature. 10.1038/s41596-024-01047-2
Intelligent Medical Devices Journal Publication
Christoph Flamm, Daniel Merkle, Peter F Stadler
Computation in chemical graph rewriting networks
In Journal of Physics: Complexity, Institute of Physics, volume 6, 2025. Institute of Physics. 10.1088/2632-072X/adb7b1
AI Methods for Health Journal Publication
Grover E.C. Guzman, Marcos E. González Laffitte, André Fujita, Peter F Stadler
Primitive, edge-short, isometric, and pantochordal cycles
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1754.cd0
AI Methods for Health Journal Publication
Grover E.C. Guzman, Peter F Stadler, André Fujita
A message-passing approach to obtain the trace of matrix functions with applications to network analysis
In Numerical Algorithms, Springer, 2025. Springer. 10.1007/s11075-025-02012-0
AI Methods for Health Journal Publication
Katherine J. Hewitt, Isabella Catharina Wiest, Jakob Nikolas Kather
Authors' reply: Re: Koga et al. Retrieval-augmented generation versus document-grounded generation: a key distinction in large language models
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 11, 2025. John Wiley and Sons Inc. 10.1002/2056-4538.70013
Intelligent Medical Devices Journal Publication
Jonas Karge
Taming Dilation in Imprecise Pooling
In Proceedings of the 25th International Conference on Principles and Practice of Multi-Agent Systems, PRIMA 2024, Springer, 428-443, 2025. Springer. 10.1007/978-3-031-77367-9_32
Composite AI Conference Publication
Nils Küchenmeister, Alex Ivliev, Markus Krötzsch
Towards Mass Spectrum Analysis with ASP
In Proceedings of the 17th International Conference on Logic Programming and Non-monotonic Reasoning, LPNMR 2024, Springer, 200-214, 2025. Springer. 10.1007/978-3-031-74209-5_16
Composite AI Conference Publication
Nicholas Leisegang, Thomas Meyer, Sebastian Rudolph
Towards Propositional KLM-Style Defeasible Standpoint Logics
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 459-475, 2025. Springer. 10.1007/978-3-031-78255-8_27
Composite AI Conference Publication
Marta Ligero, Omar S. M. El Nahhas, Mihaela Aldea, Jakob Nikolas Kather
Artificial intelligence-based biomarkers for treatment decisions in oncology
In Trends in Cancer, Cell Press, volume 11, 232-244, 2025. Cell Press. 10.1016/j.trecan.2024.12.001
Intelligent Medical Devices Journal Publication
Brennica Marlow, Alexander Vogel, Georg Kuenze, Maik Pankonin, Franziska Reinhardt, Peter F Stadler, Peter W Hildebrand, Jens Meiler
Cholesterol allosteric modulation of the oxytocin receptor
In Biophysical Journal, Elsevier B.V., 2025. Elsevier B.V.. 10.1016/j.bpj.2025.04.023
AI Methods for Health Journal Publication
Johannes Müller, Semih Çayci, Guido Montúfar
FISHER-RAO GRADIENT FLOWS OF LINEAR PROGRAMS AND STATE-ACTION NATURAL POLICY GRADIENTS
In SIAM Journal on Optimization, Society for Industrial and Applied Mathematics Publications, volume 35, 1060-1088, 2025. Society for Industrial and Applied Mathematics Publications. 10.1137/24M16534221
Composite AI Journal Publication
Adil Oezsoy, James Alexander Brooks, Marko van Treeck, Yvonne Doerffel, Ulrike Morgera, Jens Berger, Marco Gustav, Oliver Lester Saldanha, Tom Luedde, Jakob Nikolas Kather, Tobias Paul Seraphin, Michael Kallenbach
Weakly Supervised Deep Learning Can Analyze Focal Liver Lesions in Contrast-Enhanced Ultrasound
In Digestion, S. Karger AG, 2025. S. Karger AG. 10.1159/000545098
Intelligent Medical Devices Journal Publication
Tieu-Long Phan, Klaus Weinbauer, Marcos E. González Laffitte, Yingjie Pan, Daniel Merkle, Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Peter F Stadler
SynTemp: Efficient Extraction of Graph-Based Reaction Rules from Large-Scale Reaction Databases
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 2882-2896, 2025. American Chemical Society. 10.1021/acs.jcim.4c01795
AI Methods for Health Journal Publication
Oliver Lester Saldanha, Jiefu Zhu, Gustav Müller-Franzes, Zunamys I. Carrero, Nicholas R. Payne, Lorena Escudero Sánchez, Paul Christophe Varoutas, Sreenath Kyathanahally, Narmin Ghaffari Laleh, Kevin Pfeiffer, Marta Ligero, Jakob Behner, Kamarul A. Abdullah, Georgios Apostolakos, Chrysafoula Kolofousi, Antri Kleanthous, Michail Kalogeropoulos, Cristina Rossi, Sylwia Nowakowska, Alexandra Athanasiou, Raquel Perez-Lopez, Ritse Mann, Wouter Veldhuis, Julia Camps, Volkmar Schulz, Markus Wenzel, Sergey Morozov, Alexander Ciritsis, Christiane Kuhl, Fiona J. Gilbert, Daniel Truhn, Jakob Nikolas Kather
Swarm learning with weak supervision enables automatic breast cancer detection in magnetic resonance imaging
In Communications Medicine, Springer Nature, volume 5, 2025. Springer Nature. 10.1038/s43856-024-00722-5
Intelligent Medical Devices Journal Publication
Tina Schermeng, Alexander Fürll, Fabian Liessmann, Lukas von Bredow, Jan Stichel, C. David Weaver, Maik Tretbar, Jens Meiler, Annette G. Beck-Sickinger
Similar Binding Mode of a 5-Sulfonylthiouracil Derivative Antagonist at Chemerin Receptors CMKLR1 and GPR1
In Journal of Medicinal Chemistry, American Chemical Society, 2025. American Chemical Society. 10.1021/acs.jmedchem.5c00135
AI Methods for Health Journal Publication
Thomas Scott, Christian Alan Paul Smethurst, Yvonne Westermaier, Moriz Mayer, Peter Greb, Roland Kousek, Tobias Biberger, Gerd Bader, Zuzana Jandova, Philipp S. Schmalhorst, Julian E. Fuchs, Aniket Magarkar, Christoph Hoenke, Thomas Gerstberger, Steven A. Combs, Richard Pape, Saksham Phul, Sandeepkumar Kothiwale, Andreas Bergner, Carlos Zambrano-Bukonja, Scott J. Zaccanelli, Ulas Yeginer, Douglas Craig Wheeler, Kevin D. Wells, Jonathan Weinberg, Linda Wei, Stephen Vincent, Bora Tastan, Robert Spearing, Vera Simon, Michael Simon, Alexa Sen, Vincent Pit, Cédric Partinico, Ian James McNaughton, George Victor McIlvaine, Allen Lubow, Bruno Kestemont, Renton Braden Mathew Innes, Alyssa Joy Higgins, Gregory T. Hansen, Kevin M. Gildea, Thomas J. George, Lezhe Gao, Harald Feldmann, Martin Dickel, Alan Roger Coral, Keith Clayton, Andy M. Chen, Jeffrey Michael Canfield, Andrew Cai, Alexander Boykov, Krzysztof Bogusz, Walter Barmettler, Aleshin Dmitry Alekseevich, Alex G. Waterson, Harald Weinstabl, Darryl B. McConnell, Jens Meiler, Jark Böttcher, Rocco Moretti
Drugit: crowd-sourcing molecular design of non-peptidic VHL binders
In Nature Communications , Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-58406-0
AI Methods for Health Journal Publication
Ameera Vaheeda Shanavas, Manoj Changat, Peter F Stadler
On the Cut-Vertex and the Interval Transit Functions of Hypergraphs
In Graphs and Combinatorics, Springer, volume 41, 2025. Springer. 10.1007/s00373-024-02864-8
AI Methods for Health Journal Publication
Leonhard Sidl, Maximilian Faissner, Manuel Uhlir, Cristian A Velandia-Huerto, Maria Waldl, Hua-Ting Yao, Ivo L Hofacker, Peter F Stadler
Computational complexity, algorithmic scope, and evolution
In Journal of Physics: Complexity, Institute of Physics, volume 6, 2025. Institute of Physics. 10.1088/2632-072X/adb928
AI Methods for Health Journal Publication
Minh H. Tran, Cristina E. Martina, Rocco Moretti, Marcus Nagel, Kevin L. Schey, Jens Meiler
RosettaHDX: Predicting antibody-antigen interaction from hydrogen-deuterium exchange mass spectrometry data
In Journal of Structural Biology, Academic Press Inc., volume 217, 2025. Academic Press Inc.. 10.1016/j.jsb.2025.108166
AI Methods for Health Journal Publication
Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Fiona R. Kolbinger, Stefanie Speidel
Data Augmentation for Surgical Scene Segmentation with Anatomy-Aware Diffusion Models
In Proceedings of the 2025 IEEE/CVF Winter Conference on Applications of Computer Vision, WACV 2025, IEEE, 2280-2290, 2025. IEEE. 10.1109/WACV61041.2025.00228
Intelligent Medical Devices Conference Publication
Christian Vielhaus, Caspar Von Lengerke, Vincent Latzko, Justus Rischke, Martin Reisslein, Frank H. P. Fitzek
Evaluating Transport Layer Congestion Control Algorithms: A Comprehensive Survey
In IEEE Communications Surveys and Tutorials, IEEE, 2025. IEEE. 10.1109/COMST.2025.3533303
Composite AI Journal Publication
Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus Voehler, Anja Penk, Jens Meiler, Clara T. Schoeder
Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan
In Journal of Structural Biology, Academic Press Inc., volume 217, 2025. Academic Press Inc.. 10.1016/j.jsb.2025.108180
AI Methods for Health Journal Publication
Kevin Wang, Johann Suess, Dominik Rivoir, Micha Pfeiffer, Sebastian Bodenstedt, Martin Wagner, Stefanie Speidel
Towards Video-Based Force Estimation within Tool-Bowel Interaction
In Proceedings of the Medical Imaging 2025: Image-Guided Procedures, Robotic Interventions, and Modeling, SPIE, 2025. SPIE. 10.1117/12.3045915
Intelligent Medical Devices Conference Publication
Sandra Zimmermann, Paul Schwenteck, Christian Vielhaus, Juan A. Cabrera, Frank H. P. Fitzek
COSMIC - Coding for Optimized Sending in Multimedia InterPlanetary Communication
In Proceedings of the 39th International Conference on Information Networking, ICOIN 2025, IEEE Computer Society, 390-395, 2025. IEEE Computer Society. 10.1109/ICOIN63865.2025.10993152
Composite AI Conference Publication
Alexander Zlobin, Valentina Maslova, Julia Beliaeva, Jens Meiler, Andrey Golovin
Long-Range Electrostatics in Serine Proteases: Machine Learning-Driven Reaction Sampling Yields Insights for Enzyme Design
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 2003-2013, 2025. American Chemical Society. 10.1021/acs.jcim.4c01827
AI Methods for Health Journal Publication
Rajab Aghamov, Christel Baier, Toghrul Karimov, Joël Ouaknine, Jakob Piribauer
Linear dynamical systems with continuous weight functions
In Proceedings of the 27th ACM International Conference on Hybrid Systems: Computation and Control, HSCC 2024, ACM, 2024. ACM. 10.1145/3641513.3650173
Composite AI Conference Publication
Veeti Ahvonen, Damian Heiman, Antti Kuusisto, Carsten Lutz
Logical Characterizations of Recurrent Graph Neural Networks with Reals and Floats
In Proceedings of the 38th Conference on Neural Information Processing Systems, NeurIPS 2024, Neural information processing systems foundation, 2024. Neural information processing systems foundation.
Composite AI Conference Publication
Kossi Amouzouvi, Bowen Song, Sahar Vahdati, Jens Lehmann
Knowledge GeoGebra: Leveraging Geometry of Relation Embeddings in Knowledge Graph Completion
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 9832-9842, 2024. European Language Resources Association (ELRA).
Composite AI Conference Publication
Kossi Amouzouvi, Sahar Vahdati, Bowen Song, Bernard O. Bainson, Nur A. Zarin Nishat, Jens Lehmann
A Study of LFT Embeddings in the Second Order Clifford Algebra Cl(R2)
In IEEE Access, IEEE, volume 12, 187741-187755, 2024. IEEE. 10.1109/ACCESS.2024.3514303
Composite AI Journal Publication
Volodymyr Bondarenko, Jonas Schulz, Giang T. Nguyen, Frank H. P. Fitzek
Latency Visualization Emulation Scheme for Interactive Cloud XR Gaming
In Proceedings of the 2024 IEEE International Conference on Pervasive Computing and Communications Workshops and other Affiliated Events, PerCom Workshops 2024, IEEE, 385-387, 2024. IEEE. 10.1109/PerComWorkshops59983.2024.10503547
Composite AI Conference Publication
James Alexander Brooks, Michael Kallenbach, Iuliana-Pompilia Radu, Annalisa Berzigotti, Christoph F. Dietrich, Jakob Nikolas Kather, Tom Luedde, Tobias Paul Seraphin
Artificial Intelligence for Contrast-Enhanced Ultrasound of the Liver: A Systematic Review
In Digestion, S. Karger AG, 2024. S. Karger AG. 10.1159/000541540
Intelligent Medical Devices Journal Publication
Benjamin P. Brown, Richard A. Stein, Jens Meiler, Hassane S. Mchaourab
Approximating Projections of Conformational Boltzmann Distributions with AlphaFold2 Predictions: Opportunities and Limitations
In Journal of Chemical Theory and Computation, American Chemical Society, volume 20, 1434-1447, 2024. American Chemical Society. 10.1021/acs.jctc.3c01081
AI Methods for Health Journal Publication
Elias Crum, Antonio De Santis, Manon Ovide, Jiaxin Pan, Alessia Pisu, Nicolas Lazzari, Sebastian Rudolph
Enriching Ontologies with Disjointness Axioms using Large Language Models
In Proceedings of the Joint of the 2nd Workshop on Knowledge Base Construction from Pre-Trained Language Models and the 3rd Challenge on Language Models for Knowledge Base Construction, KBC-LM-LM-KBC 2024, CEUR-WS, 2024. CEUR-WS.
Composite AI Conference Publication
Zdravko Dugonjić, Adrien Pupier, Benjamin Lecouteux, Maximin Coavoux
What has LeBenchmark Learnt about French Syntax?
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 17493-17499, 2024. European Language Resources Association (ELRA).
Composite AI Conference Publication
Omar S. M. El Nahhas, Chiara M. L. Loeffler, Zunamys I. Carrero, Marko van Treeck, Fiona R. Kolbinger, Katherine J. Hewitt, Hannah S. Muti, Mara Graziani, Qinghe Zeng, Julien Calderaro, Nadina Ortiz-Brüchle, Tanwei Yuan, Michael Hoffmeister, Hermann Brenner, Alexander Brobeil, Jorge S. Reis-Filho, Jakob Nikolas Kather
Regression-based Deep-Learning predicts molecular biomarkers from pathology slides
In Nature Communications, Nature Research, volume 15, 2024. Nature Research. 10.1038/s41467-024-45589-1
Intelligent Medical Devices Journal Publication
Dyke Ferber, Georg Wölflein, Isabella Catharina Wiest, Marta Ligero, Srividhya Sainath, Narmin Ghaffari Laleh, Omar S. M. El Nahhas, Gustav Müller-Franzes, Dirk Jäger, Daniel Truhn, Jakob Nikolas Kather
In-context learning enables multimodal large language models to classify cancer pathology images
In Nature Communications , Nature Research, volume 15, 2024. Nature Research. 10.1038/s41467-024-51465-9
Intelligent Medical Devices Journal Publication
Letian Fu, Gaurav Datta, Huang Huang, William Chung-Ho Panitch, Jaimyn Drake, Joseph Ortiz, Mustafa Mukadam, Mike Lambeta, Roberto Calandra, Ken Goldberg
A Touch, Vision, and Language Dataset for Multimodal Alignment
In Proceedings of the 41st International Conference on Machine Learning, ICML 2024, ML Research Press, 14080-14101, 2024. ML Research Press.
Composite AI Conference Publication
Niklas Funk, Erik Helmut, Georgia Chalvatzaki, Roberto Calandra, Jan Peters
Evetac: An Event-Based Optical Tactile Sensor for Robotic Manipulation
In IEEE Transactions on Robotics, IEEE, volume 40, 3812-3832, 2024. IEEE. 10.1109/TRO.2024.3428430
Composite AI Journal Publication
Bernhard Ganter, Tom Hanika, Johannes Hirth, S. Obiedkov
Collaborative Hybrid Human AI Learning through Conceptual Exploration
In Proceedings of the 3rd International Conference on Hybrid Human-Artificial Intelligence, HHAI-WS 2024, CEUR-WS, 1-8, 2024. CEUR-WS.
Composite AI Conference Publication
Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency (Extended Abstract)
In Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning, NMR 2024, CEUR-WS, 183-186, 2024. CEUR-WS.
Composite AI Conference Publication
Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3386-3394, 2024. International Joint Conferences on Artificial Intelligence.
Composite AI Conference Publication
Marcos E. González Laffitte, Klaus Weinbauer, Tieu-Long Phan, Nora Beier, Nico Domschke, Christoph Flamm, Thomas Gatter, Daniel Merkle, Peter F Stadler
Partial Imaginary Transition State (ITS) Graphs: A Formal Framework for Research and Analysis of Atom-to-Atom Maps of Unbalanced Chemical Reactions and Their Completions
In Symmetry, Multidisciplinary Digital Publishing Institute (MDPI), volume 16, 2024. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/sym16091217
AI Methods for Health Journal Publication
Marcos E. González Laffitte, Peter F Stadler
Progressive Multiple Alignment of Graphs
In Algorithms, Multidisciplinary Digital Publishing Institute (MDPI), volume 17, 2024. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/a17030116
AI Methods for Health Journal Publication
Marco Gustav, Nic G. Reitsam, Zunamys I. Carrero, Chiara M. L. Loeffler, Marko van Treeck, Tanwei Yuan, Nicholas P. West, Philip Quirke, Titus J. Brinker, Hermann Brenner, Loëtitia Favre, Bruno Märkl, Albrecht Stenzinger, Alexander Brobeil, Michael Hoffmeister, Julien Calderaro, Anaïs Pujals, Jakob Nikolas Kather
Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology
In npj Precision Oncology, Nature Research, volume 8, 2024. Nature Research. 10.1038/s41698-024-00592-z
Intelligent Medical Devices Journal Publication
Grover E.C. Guzman, Peter F Stadler, André Fujita
Cavity approach for the approximation of spectral density of graphs with heterogeneous structures
In Physical Review E, American Physical Society, volume 109, 2024. American Physical Society. 10.1103/PhysRevE.109.034303
AI Methods for Health Journal Publication
Tianyu Han, Laura Zigutyte, Luisa Huck, Marc Sebastian Huppertz, Robert Siepmann, Yossi Gandelsman, Christian Blüthgen, Firas Khader, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Reconstruction of patient-specific confounders in AI-based radiologic image interpretation using generative pretraining
In Cell Reports Medicine, Cell Press, volume 5, 2024. Cell Press. 10.1016/j.xcrm.2024.101713
Intelligent Medical Devices Journal Publication
Tianyu Han, Sven Nebelung, Firas Khader, Tianci Wang, Gustav Müller-Franzes, Christiane Kuhl, Sebastian Foersch, Jens Kleesiek, Christoph Haarburger, Keno K. Bressem, Jakob Nikolas Kather, Daniel Truhn
Medical large language models are susceptible to targeted misinformation attacks
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01282-7
Intelligent Medical Devices Journal Publication
Philipp Hanisch, Markus Krötzsch
Chase Termination Beyond Polynomial Time
In Proc. ACM Manag. Data, ACM, volume 2(2), 2024. ACM. 10.1145/3651594
Composite AI Journal Publication
Katherine J. Hewitt, Isabella Catharina Wiest, Zunamys I. Carrero, Laura Bejan, Thomas O Millner, Sebastian Brandner, Jakob Nikolas Kather
Large language models as a diagnostic support tool in neuropathology
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 10, 2024. John Wiley and Sons Inc. 10.1002/2056-4538.70009
Intelligent Medical Devices Journal Publication
Lars Hilgers, Narmin Ghaffari Laleh, Nicholas P. West, Alice Westwood, Katherine J. Hewitt, Philip Quirke, Heike I Grabsch, Zunamys I. Carrero, Emylou Matthaei, Chiara M. L. Loeffler, Titus J. Brinker, Tanwei Yuan, Hermann Brenner, Alexander Brobeil, Michael Hoffmeister, Jakob Nikolas Kather
Automated curation of large-scale cancer histopathology image datasets using deep learning
In Histopathology, John Wiley and Sons Inc, volume 84, 1139-1153, 2024. John Wiley and Sons Inc. 10.1111/his.15159
Intelligent Medical Devices Journal Publication
Hanna Hoffmann, Isabel Funke, Philipp Peters, Danush Kumar Venkatesh, Jan Egger, Dominik Rivoir, Rainer Röhrig, Frank Hölzle, Sebastian Bodenstedt, Marie-Christin Willemer, Stefanie Speidel, Behrus Puladi
AIxSuture: vision-based assessment of open suturing skills
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 1045-1052, 2024. Springer. 10.1007/s11548-024-03093-3
Intelligent Medical Devices Journal Publication
Hernan Inojosa, Isabel Voigt, Judith Wenk, Dyke Ferber, Isabella Catharina Wiest, Dario Antweiler, Eva Weicken, Stephen Gilbert, Jakob Nikolas Kather, Katja Akgün, Tjalf Ziemssen
Integrating large language models in care, research, and education in multiple sclerosis management
In Multiple Sclerosis Journal, SAGE Publications Ltd, volume 30, 1392-1401, 2024. SAGE Publications Ltd. 10.1177/13524585241277376
Intelligent Medical Devices Journal Publication
Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: A Scalable and Versatile Datalog Engine
In Proceedings of the 5th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2024, CEUR-WS, 43-47, 2024. CEUR-WS.
Composite AI Conference Publication
Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: Your Friendly and Versatile Rule Reasoning Toolkit
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 743-754, 2024. AAAI.
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Xiaofeng Jiang, Michael Hoffmeister, Hermann Brenner, Hannah S. Muti, Tanwei Yuan, Sebastian Foersch, Nicholas P. West, Alexander Brobeil, Jitendra Jonnagaddala, Nicholas J. Hawkins, Robyn L. Ward, Titus J. Brinker, Oliver Lester Saldanha, Jia Ke, Wolfram Mueller, Heike I Grabsch, Philip Quirke, Daniel Truhn, Jakob Nikolas Kather
End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study
In The Lancet Digital Health, Elsevier Ltd, volume 6, e33-e43, 2024. Elsevier Ltd. 10.1016/S2589-7500(23)00208-X
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Caleb A. H. Jones, Benjamin P. Brown, Daniel C. Schultz, Julie Engers, Valerie M. Kramlinger, Jens Meiler, Craig W. Lindsley
Computer-Aided Design and Biological Evaluation of Diazaspirocyclic D4R Antagonists
In ACS Chemical Neuroscience, American Chemical Society, volume 15, 2396-2407, 2024. American Chemical Society. 10.1021/acschemneuro.4c00086
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Jonas Karge, Sebastian Rudolph, Juliette-Michelle Burkhardt, Dominik Rusovac
To Lead or to be Led: A Generalized Condorcet Jury Theorem under Dependence
In Proceedings of the 23rd International Conference on Autonomous Agents and Multiagent Systems, AAMAS 2024, International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS), 983-991, 2024. International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS).
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Jakob Nikolas Kather, Dyke Ferber, Isabella Catharina Wiest, Stephen Gilbert, Daniel Truhn
Large language models could make natural language again the universal interface of healthcare
In Nature Medicine, Nature Research, volume 30, 2708-2710, 2024. Nature Research. 10.1038/s41591-024-03199-w
Intelligent Medical Devices Journal Publication
Kathlen Kohn, Guido Montúfar, Vahid Shahverdi, Matthew Trager
Function Space and Critical Points of Linear Convolutional Networks
In SIAM Journal on Applied Algebra and Geometry, Society for Industrial and Applied Mathematics Publications, volume 8, 333-362, 2024. Society for Industrial and Applied Mathematics Publications. 10.1137/23M1565504
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Fiona R. Kolbinger, Gregory P. Veldhuizen, Jiefu Zhu, Daniel Truhn, Jakob Nikolas Kather
Reporting guidelines in medical artificial intelligence: a systematic review and meta-analysis
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00492-0
Intelligent Medical Devices Journal Publication
D. Kosakin, S. Obiedkov, E. Rakhilina, I. Smirnov, A. Vyrenkova, E. Zalivina
Russian Learner Corpus: Towards Error-Cause Annotation for L2 Russian
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 14240-14258, 2024. European Language Resources Association (ELRA).
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Charlotte Langer
Decision-making power and responsibility in an automated administration
In Discover Artificial Intelligence, Springer Nature, volume 4, 2024. Springer Nature. 10.1007/s44163-024-00152-1
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Jens Lehmann, Dhananjay Bhandiwad, Preetam Gattogi, Sahar Vahdati
Beyond Boundaries: A Human-like Approach for Question Answering over Structured and Unstructured Information Sources
In Transactions of the Association for Computational Linguistics, MIT Press Journals, volume 12, 786-802, 2024. MIT Press Journals. 10.1162/tacl_a_00671
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Fabian Liessmann, Lukas von Bredow, Jens Meiler, Ines Liebscher
Targeting adhesion G protein-coupled receptors. Current status and future perspectives
In Structure, Cell Press, volume 32, 2188-2205, 2024. Cell Press. 10.1016/j.str.2024.10.022
AI Methods for Health Journal Publication
Yunchao Liu, Ha Dong, Xin Wang, Rocco Moretti, Yu Wang, Zhaoqian Su, Jiawei Gu, Bobby Bodenheimer, C. David Weaver, Jens Meiler, Tyler Derr
WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking
In Proceedings of the 38th Conference on Neural Information Processing Systems, NeurIPS 2024, Neural information processing systems foundation, 2024. Neural information processing systems foundation.
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Chiara M. L. Loeffler, Omar S. M. El Nahhas, Hannah S. Muti, Zunamys I. Carrero, Tobias Seibel, Marko van Treeck, Didem Cifci, Marco Gustav, Kevin Bretz, Nadine T. Gaisa, Kjong-Van Lehmann, Alexandra Leary, Pier Selenica, Jorge S. Reis-Filho, Nadina Ortiz-Bruechle, Jakob Nikolas Kather
Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types
In BMC Biology, BioMed Central Ltd, volume 22, 2024. BioMed Central Ltd. 10.1186/s12915-024-02022-9
Intelligent Medical Devices Journal Publication
Carsten Lutz, Quentin Manière
Adding Circumscription to Decidable Fragments of First-Order Logic: A Complexity Rollercoaster
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 531-541, 2024. AAAI.
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Carsten Lutz, Lukas Schulze
Description Logics with Abstraction and Refinement: From ALC to EL
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 542-552, 2024. AAAI.
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Tim S. Lyon, Jonas Karge
Constructive Interpolation and Concept-Based Beth Definability for Description Logics via Sequents
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3484-3492, 2024. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2024/386
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Lucas Fabian Naumann, Jannik Irmai, Shengxian Zhao, Bjoern Andres
Box Facets and Cut Facets of Lifted Multicut Polytopes
In Proceedings of the 41st International Conference on Machine Learning, ICML 2024, ML Research Press, 37365-37375, 2024. ML Research Press.
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Anna Niarakis, Reinhard Laubenbacher, Gary An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak, Kristin Reiche, María Rodríguez Martínez, Liesbet Geris, Luiz Ladeira, Lorenzo Veschini, Michael L. Blinov, Francesco Messina, Luis L. Fonseca, Sandra Ferreira, Arnau Montagud, Vincent Noël, Malvina Marku, Eirini Tsirvouli, Marcella M. Torres, Leonard A. Harris, T.J. Sego, Chase Cockrell, Amanda E. Shick, Hasan Balci, Albin Salazar, Kinza Rian, Ahmed Abdelmonem Hemedan, Marina Esteban-Medina, Bernard Staumont, Esteban Hernandez-Vargas, Shiny Martis B, Alejandro Madrid-Valiente, Panagiotis Karampelesis, Luis Sordo Vieira, Pradyumna Harlapur, Alexander Kulesza, Niloofar Nikaein, Winston Garira, Rahuman S. Malik Sheriff, Juilee Thakar, Van Du T. Tran, Jose Carbonell-Caballero, Soroush Safaei, Alfonso Valencia, Andrei Zinovyev, James A. Glazier
Immune digital twins for complex human pathologies: applications, limitations, and challenges
In npj Systems Biology and Applications, Nature Research, volume 10, 2024. Nature Research. 10.1038/s41540-024-00450-5
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Jan M. Niehues, Gustav Müller-Franzes, Yoni Schirris, Sophia Janine Wagner, Michael Jendrusch, Matthias Kloor, Alexander T. Pearson, Hannah S. Muti, Katherine J. Hewitt, Gregory P. Veldhuizen, Laura Zigutyte, Daniel Truhn, Jakob Nikolas Kather
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance
In Computers in Biology and Medicine, Elsevier Ltd, volume 175, 2024. Elsevier Ltd. 10.1016/j.compbiomed.2024.108410
Intelligent Medical Devices Journal Publication
S. Obiedkov, Barış Sertkaya
Probably Approximately Correct Ontology Completion with pacco (Extended Abstract)
In Proceedings of the 37th International Workshop on Description Logics, DL 2024, CEUR-WS, 2024. CEUR-WS.
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Iuliia Ozerova, Jörg Fallmann, Mario Mörl, Matthias Bernt, Sonja J. Prohaska, Peter F Stadler
Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution
In Genome Biology and Evolution, Oxford University Press, volume 16, 2024. Oxford University Press. 10.1093/gbe/evae232
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Raquel Perez-Lopez, Narmin Ghaffari Laleh, Faisal Mahmood, Jakob Nikolas Kather
A guide to artificial intelligence for cancer researchers
In Nature Reviews Cancer, Nature Research, volume 24, 427-441, 2024. Nature Research. 10.1038/s41568-024-00694-7
Intelligent Medical Devices Journal Publication
Antonia Sophia Peter, Dieter S. Hoffmann, Johannes Klier, Christina M. Lange, Johanna Moeller, Victoria Most, Christina K. Wüst, Max Beining, Sevilay Gülesen, Hannes Junker, Birke Brumme, Torben Schiffner, Jens Meiler, Clara T. Schoeder
Strategies of rational and structure-driven vaccine design for Arenaviruses
In Infection, Genetics and Evolution, Elsevier B.V., volume 123, 2024. Elsevier B.V.. 10.1016/j.meegid.2024.105626
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Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob L. Andersen, Rolf Fagerberg, Peter F Stadler
Reaction rebalancing: a novel approach to curating reaction databases
In Journal of Cheminformatics, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13321-024-00875-4
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Michelle Philipp, Christopher W Moth, Nikola Ristic, Johanna K S Tiemann, Florian Seufert, Aleksandra Panfilova, Jens Meiler, Peter W Hildebrand, Amelie Stein, Daniel Wiegreffe, René Staritzbichler
MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts
In Nucleic Acids Research, Oxford University Press, volume 52, W132-W139, 2024. Oxford University Press. 10.1093/nar/gkae301
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Nic G. Reitsam, Johanna Sophie Enke, Kien Vu Trung, Bruno Märkl, Jakob Nikolas Kather
Artificial Intelligence in Colorectal Cancer: From Patient Screening over Tailoring Treatment Decisions to Identification of Novel Biomarkers
In Digestion, S. Karger AG, volume 105, 331-344, 2024. S. Karger AG. 10.1159/000539678
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Nic G. Reitsam, Veselin Grozdanov, Chiara M. L. Löffler, Hannah S. Muti, Bianca Grosser, Jakob Nikolas Kather, Bruno Märkl
Novel biomarker SARIFA in colorectal cancer: highly prognostic, not genetically driven and histologic indicator of a distinct tumor biology
In Cancer Gene Therapy, Springer Nature, volume 31, 207-216, 2024. Springer Nature. 10.1038/s41417-023-00695-y
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Nic G. Reitsam, Bianca Grosser, David F. Steiner, Veselin Grozdanov, Ellery Wulczyn, Vincenzo L’Imperio, Markus Plass, Heimo Müller, Kurt Zatloukal, Hannah S. Muti, Jakob Nikolas Kather, Bruno Märkl
Converging deep learning and human-observed tumor-adipocyte interaction as a biomarker in colorectal cancer
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00589-6
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Dominik Rusovac, Markus Hecher, Martin Gebser, Sarah Alice Gaggl, Johannes K. Fichte
Navigating and Querying Answer Sets: How Hard Is It Really and Why?
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 642-653, 2024. AAAI.
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Farid Saberi-Movahed, Bitasta Biswas, Prayag Tiwari, Jens Lehmann, Sahar Vahdati
Deep Nonnegative Matrix Factorization with Joint Global and Local Structure Preservation
In Expert Systems with Applications, Elsevier Ltd, volume 249, 2024. Elsevier Ltd. 10.1016/j.eswa.2024.123645
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Anahy Santiago Arguello, Guillaume E. Scholz, Peter F Stadler
Core Potentials: The Consensus Segmentation Conjecture
In Mathematics in Computer Science, Birkhauser, volume 18, 2024. Birkhauser. 10.1007/s11786-024-00593-y
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Stephanie Schiedermair
Between Efficiency and Loss of Control: The Use of Artificial Intelligence by the Public Administration in the Mirror of the Law
In Quo vadis Artificial Intelligence in Nuclear Waste Management?, Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.), 16-18, 2024. Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.).
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Stephanie Schiedermair
The Civil Service and Artificial Intelligence
In The Handbook of Civil Service in Europe, Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.), 2024. Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.).
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Richard Schroedter, Adnan Haidar, Ronald Tetzlaff
Fault Impact Map for Memristive Crossbar Neural Networks
In Proceedings of the 13th International Conference on Modern Circuits and Systems Technologies, MOCAST 2024, IEEE, 2024. IEEE. 10.1109/MOCAST61810.2024.10615515
AI Compute Paradigms Conference Publication
Jonas Schulz, Susu Hu, Stefanie Speidel, Patrick Seeling, Frank H. P. Fitzek
Negative Latency in Computer Vision: A Key to Efficient Edge Offloading
In Proceedings of the 2024 IEEE Global Communications Conference, GLOBECOM 2024, IEEE, 3110-3115, 2024. IEEE. 10.1109/GLOBECOM52923.2024.10901398
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Jonas Schulz, Clemens Dubslaff, Patrick Seeling, Shu-Chen Li, Stefanie Speidel, Frank H. P. Fitzek
Negative Latency in the Tactile Internet as Enabler for Global Metaverse Immersion
In IEEE Network, IEEE, volume 38, 167-173, 2024. IEEE. 10.1109/MNET.2024.3375522
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Sudharshan Suresh, Haozhi Qi, Tingfan Wu, Taosha Fan, Luis Pineda, Mike Lambeta, Jitendra Malik, Mrinal Kalakrishnan, Roberto Calandra, Michael Kaess, Joseph Ortiz, Mustafa Mukadam
NeuralFeels with neural fields: Visuotactile perception for in-hand manipulation
In Science Robotics, American Association for the Advancement of Science, volume 9, 2024. American Association for the Advancement of Science. 10.1126/scirobotics.adl0628
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Yidan Tang, Rocco Moretti, Jens Meiler
Recent Advances in Automated Structure-Based De Novo Drug Design
In Journal of Chemical Information and Modeling, American Chemical Society, volume 64, 1794-1805, 2024. American Chemical Society. 10.1021/acs.jcim.4c00247
AI Methods for Health Journal Publication
Daniel Truhn, Chiara M. L. Loeffler, Gustav Müller-Franzes, Sven Nebelung, Katherine J. Hewitt, Sebastian Brandner, Keno K. Bressem, Sebastian Foersch, Jakob Nikolas Kather
Extracting structured information from unstructured histopathology reports using generative pre-trained transformer 4 (GPT-4)
In Journal of Pathology, John Wiley and Sons Ltd, volume 262, 310-319, 2024. John Wiley and Sons Ltd. 10.1002/path.6232
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Gia-Bao Truong, Thanh-An Pham, Van-Thinh To, Hoang-Son Lai Le, Phuoc-Chung Van Nguyen, The-Chuong Trinh, Tieu-Long Phan, Tuyen Ngoc Truong
Discovery of Vascular Endothelial Growth Factor Receptor 2 Inhibitors Employing Junction Tree Variational Autoencoder with Bayesian Optimization and Gradient Ascent
In ACS Omega, American Chemical Society, volume 9, 47180-47193, 2024. American Chemical Society. 10.1021/acsomega.4c07689
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Michaela Unger, Jakob Nikolas Kather
A systematic analysis of deep learning in genomics and histopathology for precision oncology
In BMC Medical Genomics, BioMed Central Ltd, volume 17, 2024. BioMed Central Ltd. 10.1186/s12920-024-01796-9
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Michaela Unger, Jakob Nikolas Kather
Deep learning in cancer genomics and histopathology
In Genome Medicine, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13073-024-01315-6
Intelligent Medical Devices Journal Publication
Brinda Vallat, Benjamin M. Webb, John D. Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei, Ezra Peisach, Arthur Zalevsky, Jared Sagendorf, Hongsuda Tangmunarunkit, Serban Voinea, Monica Sekharan, Jian Yu, Alexander A.M.J.J. Bonvin, Frank DiMaio, Gerhard Hummer, Jens Meiler, Emad Tajkhorshid, Thomas E. Ferrin, Catherine L. Lawson, Alexander Leitner, Juri Rappsilber, Claus A.M. Seidel, Cy M. Jeffries, Stephen K. Burley, Jeffrey C. Hoch, Genji Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar, Torsten Schwede, Jill Trewhella, Carl Kesselman, Helen M. Berman, Andrej Sali
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods
In Journal of Molecular Biology, Academic Press, volume 436, 2024. Academic Press. 10.1016/j.jmb.2024.168546
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Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Fiona R. Kolbinger, Marius Distler, Jürgen Weitz, Stefanie Speidel
Exploring semantic consistency in unpaired image translation to generate data for surgical applications
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 985-993, 2024. Springer. 10.1007/s11548-024-03079-1
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Sarah von Löhneysen, Mario Mörl, Peter F Stadler
Limits of experimental evidence in RNA secondary structure prediction
In Frontiers in Bioinformatics, Frontiers Media SA, volume 4, 2024. Frontiers Media SA. 10.3389/fbinf.2024.1346779
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Kien Vu Trung, Marcus Hollenbach, Gregory P. Veldhuizen, Oliver Lester Saldanha, Jakob Garbe, Jonas Rosendahl, Sebastian Krug, Patrick Michl, Jürgen Feisthammel, Thomas Karlas, Jochen Hampe, Albrecht Hoffmeister, Jakob Nikolas Kather
Deep Learning-Based Detection of Malignant Bile Duct Stenosis in Fluoroscopy Images of Endoscopic Retrograde Cholangiopancreatography
In Digestion, S. Karger AG, 2024. S. Karger AG. 10.1159/000543049
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Ran Wei, Nathan Lambert, Anthony McDonald, Alfredo Garcia, Roberto Calandra
A Unified View on Solving Objective Mismatch in Model-Based Reinforcement Learning
In Transactions on Machine Learning Research, Transactions on Machine Learning Research, volume 2024, 2024. Transactions on Machine Learning Research.
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Isabella Catharina Wiest, Dyke Ferber, Jiefu Zhu, Marko van Treeck, Sonja K. Meyer, Radhika Juglan, Zunamys I. Carrero, Daniel Paech, Jens Kleesiek, Matthias P. Ebert, Daniel Truhn, Jakob Nikolas Kather
Privacy-preserving large language models for structured medical information retrieval
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01233-2
Intelligent Medical Devices Journal Publication
Isabella Catharina Wiest, Falk Gerrik Verhees, Dyke Ferber, Jiefu Zhu, Michael Bauer, Ute Lewitzka, Andrea Pfennig, Pavol Mikolas, Jakob Nikolas Kather
Detection of suicidality from medical text using privacy-preserving large language models
In British Journal of Psychiatry, Cambridge University Press, volume 225, 532-537, 2024. Cambridge University Press. 10.1192/bjp.2024.134
Intelligent Medical Devices Journal Publication
Jiajing Zhang, Lyuqiao Zhong, Yushan Yang, Jonas Schulz, Giang T. Nguyen, Frank H. P. Fitzek
LEON: Simulating Handover Integrating Non-Terrestrial Networks with 5G and beyond
In Proceedings of the 10th Workshop on Micro Aerial Vehicle Networks, Systems, and Applications, DroNet 2024, ACM, 43-48, 2024. ACM. 10.1145/3661810.3663470
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Laura Zigutyte, Thomas Sorz-Nechay, Jan Clusmann, Jakob Nikolas Kather
Use of artificial intelligence for liver diseases: A survey from the EASL congress 2024
In JHEP Reports, Elsevier B.V., volume 6, 2024. Elsevier B.V.. 10.1016/j.jhepr.2024.101209
Intelligent Medical Devices Journal Publication
Dörthe Arndt, Stephan Mennicke
Notation3 as an Existential Rule Language
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 70-85, 2023. Springer. 10.1007/978-3-031-45072-3_5
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Martin Bogdan
Is Boredom an Indicator on the way to Singularity of Artificial Intelligence? Hypotheses as Thought-Provoking Impulse
In Proceedings of the ESANN 2023, European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, 2023. Computational Intelligence and Machine Learning. 10.14428/esann/2023.ES2023-89
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Pierre Bréchet, Katerina Papagiannouli, Jing An, Guido Montúfar
Critical Points and Convergence Analysis of Generative Deep Linear Networks Trained with Bures-Wasserstein Loss
In Proceedings of the 40th International Conference on Machine Learning, ICML 2023, ML Research Press, 3106-3147, 2023. ML Research Press.
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Julien Calderaro, Narmin Ghaffari Laleh, Qinghe Zeng, Pascale Maille, Loëtitia Favre, Anaïs Pujals, Christophe Klein, Céline Bazille, Lara R. Heij, Arnaud Uguen, Tom Luedde, Luca Di Tommaso, Aurélie Beaufrère, Augustin Chatain, Delphine Gastineau, Cong Trung Nguyen, Hiep Nguyen-Canh, Khuyen Nguyen Thi, Viviane Gnemmi, Rondell P. Graham, Frédéric Charlotte, Dominique Wendum, Mukul Vij, Daniela S. Allende, Federico Aucejo, Alba Diaz, Benjamin Rivière, Astrid Herrero, Katja Evert, Diego Francesco Calvisi, Jérémy Augustin, Wei Qiang Leow, Howard Ho Wai Leung, Emmanuel Boleslawski, Mohamed Rela, Arnaud François, Anthony Wing-Hung Cha, Alejandro Forner, Maria Reig, Manon Allaire, Olivier Scatton, Denis Chatelain, Camille Boulagnon-Rombi, Nathalie Sturm, Benjamin Menahem, Eric Frouin, David Tougeron, Christophe Tournigand, Emmanuelle Kempf, Haeryoung Kim, Massih Ningarhari, Sophie Michalak-Provost, Purva Gopal, Raffaele Brustia, Eric Vibert, Kornelius Schulze, Darius F. Rüther, Sören A. Weidemann, Rami Rhaiem, Jean-Michel Pawlotsky, Xuchen Zhang, Alain Luciani, Sébastien Mulé, Alexis Laurent, Giuliana Amaddeo, Hélène Regnault, Eleonora De Martin, Christine Sempoux, Pooja Navale, Maria Westerhoff, Regina Cheuk-Lam Lo, Jan Bednarsch, Annette Gouw, Catherine Guettier, Marie Lequoy, Kenichi Harada, Pimsiri Sripongpun, Poowadon Wetwittayaklang, Nicolas Loménie, Jarukit Tantipisit, Apichat Kaewdech, Jeanne Shen, Valérie Paradis, Stefano Caruso, Jakob Nikolas Kather
Deep learning-based phenotyping reclassifies combined hepatocellular-cholangiocarcinoma
In Nature Communications, Nature Research, volume 14, 2023. Nature Research. 10.1038/s41467-023-43749-3
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Balder ten Cate, Maurice Funk, Jean Christoph Jung, Carsten Lutz
SAT-Based PAC Learning of Description Logic Concepts
In Proceedings of the 32nd International Joint Conference on Artificial Intelligence, IJCAI 2023, International Joint Conferences on Artificial Intelligence, 3347-3355, 2023. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2023/373
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The future landscape of large language models in medicine
In Communications Medicine, Springer Nature, volume 3, 2023. Springer Nature. 10.1038/s43856-023-00370-1
Intelligent Medical Devices Journal Publication
Edgar M.G. Dorausch, Daniel Swist, Moritz Herzog, Christoph Statz, Julian Kober, Cornelius Kühnöl, Tönnis Trittler, Nora Martens, Franz Brinkmann, Jochen Hampe, Gerhard Fettweis
Adoption and evaluation of a multistatic Fourier-based synthetic aperture radar method for ultrasound imaging
In Proceedings of the Medical Imaging 2023: Ultrasonic Imaging and Tomography, SPIE, 2023. SPIE. 10.1117/12.2653898
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Stefan Ellmauthaler, Lukas Gerlach
ADF-BDD.DEV: Insights to undecided Statements in Abstract Dialectical Frameworks
In Proceedings of the 7th Workshop on Advances in Argumentation in Artificial Intelligence, AI^3 2023, CEUR-WS, 2023. CEUR-WS.
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Maurice Funk, Simon Hosemann, Jean Christoph Jung, Carsten Lutz
Towards Ontology Construction with Language Models
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Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
In Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023, AAAI Press, 6372-6379, 2023. AAAI Press. 10.1609/aaai.v37i5.25784
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Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
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Lukas Gerlach, David Carral
Do Repeat Yourself: Understanding Sufficient Conditions for Restricted Chase Non-Termination
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 301-310, 2023. AAAI. 10.24963/kr.2023/30
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Larry González, Alex Ivliev, Markus Krötzsch, Stephan Mennicke
Efficient Dependency Analysis for Existential Rules
In Proceedings of the 15th Alberto Mendelzon International Workshop on Foundations of Data Management, AMW 2023, CEUR-WS, 2023. CEUR-WS.
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Katherine J. Hewitt, Chiara M. L. Löffler, Hannah S. Muti, Anna Sophie Berghoff, Christian Eisenlöffel, Marko van Treeck, Zunamys I. Carrero, Omar S. M. El Nahhas, Gregory P. Veldhuizen, Sophie Weil, Oliver Lester Saldanha, Laura Bejan, Thomas O Millner, Sebastian Brandner, Sascha Brückmann, Jakob Nikolas Kather
Direct image to subtype prediction for brain tumors using deep learning
In Neuro-Oncology Advances, Oxford University Press, volume 5, 2023. Oxford University Press. 10.1093/noajnl/vdad139
Intelligent Medical Devices Journal Publication
Alex Ivliev, Stefan Ellmauthaler, Lukas Gerlach, Maximilian Marx, Matthias Meißner, Simon Meusel, Markus Krötzsch
Nemo: First Glimpse of a New Rule Engine
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An MRI Deep Learning Model Predicts Outcome in Rectal Cancer
In Radiology, Radiological Society of North America Inc., volume 307, 2023. Radiological Society of North America Inc.. 10.1148/radiol.222223
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Denoising diffusion probabilistic models for 3D medical image generation
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-34341-2
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Optimisation via encodings: a renormalisation group perspective
In Journal of Physics A: Mathematical and Theoretical, Institute of Physics, volume 56, 2023. Institute of Physics. 10.1088/1751-8121/ad07c9
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Jens Lehmann, Preetam Gattogi, Dhananjay Bhandiwad, Sébastien Ferré, Sahar Vahdati
Language Models as Controlled Natural Language Semantic Parsers for Knowledge Graph Question Answering
In Proceedings of the 26th European Conference on Artificial Intelligence, ECAI 2023, IOS Press BV, 1348-1356, 2023. IOS Press BV. 10.3233/FAIA230411
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Improving the Modeling of Extracellular Ligand Binding Pockets in RosettaGPCR for Conformational Selection
In International Journal of Molecular Sciences, Multidisciplinary Digital Publishing Institute (MDPI), volume 24, 2023. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/ijms24097788
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Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 36th International Workshop on Description Logics, DL 2023, CEUR-WS, 2023. CEUR-WS.
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Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 482-491, 2023. AAAI.
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Description Logics with Abstraction and Refinement
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 492-501, 2023. AAAI.
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Targeting ion channels with ultra-large library screening for hit discovery
In Frontiers in Molecular Neuroscience, Frontiers Media SA, volume 16, 2023. Frontiers Media SA. 10.3389/fnmol.2023.1336004
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Geometry and convergence of natural policy gradient methods
In Information Geometry, Springer, volume 7, 485-523, 2023. Springer. 10.1007/s41884-023-00106-z
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Evelyn Muschter, Jonas Schulz, Máté Tömösközi, Leonie Herbst, Lena Küssel, Merve Sefunç, Stefan Holtzhausen, Stefanie Speidel, Frank H. P. Fitzek, Shu-Chen Li
Coming in handy: CeTI-Age — A comprehensive database of kinematic hand movements across the lifespan
In Scientific Data, Nature Research, volume 10, 2023. Nature Research. 10.1038/s41597-023-02738-3
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Hannah S. Muti, Christoph Röcken, Hans-Michael Behrens, Chiara M. L. Löffler, Nic G. Reitsam, Bianca Grosser, Bruno Märkl, Daniel E. Stange, Xiaofeng Jiang, Gregory P. Veldhuizen, Daniel Truhn, Matthias P. Ebert, Heike I Grabsch, Jakob Nikolas Kather
Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology: a retrospective multicentric study
In European Journal of Cancer, Elsevier Ltd, volume 194, 2023. Elsevier Ltd. 10.1016/j.ejca.2023.113335
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Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study
In Cell Reports Medicine, Cell Press, volume 4, 2023. Cell Press. 10.1016/j.xcrm.2023.100980
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A framework for artificial intelligence in cancer research and precision oncology
In npj Precision Oncology, Nature Research, volume 7, 2023. Nature Research. 10.1038/s41698-023-00383-y
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Overcoming the challenges to implementation of artificial intelligence in pathology
In Journal of the National Cancer Institute, Oxford University Press, volume 115, 608-612, 2023. Oxford University Press. 10.1093/jnci/djad048
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Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning
In Gastric Cancer, Springer, volume 26, 264-274, 2023. Springer. 10.1007/s10120-022-01347-0
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El derecho al olvido en Luxemburgo, Estrasburgo, Karlsruhe y el mundo
In Derechos Fundmamentales y Democracia en el Constitucionalismo Digital, Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.), 587-607, 2023. Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.).
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In Datenschutzdurchführungsgesetz Sachsen, 2023. Schiedermair (Hrsg.).
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Zwischen Effizienz und Kontrollverlust: Der Einsatz von Künstlicher Intelligenz durch die Verwaltung im Spiegel des Rechts
In Quo Vadis Künstliche Intelligenz in der nuklearen Entsorgung?, Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.), 18-22, 2023. Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.).
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Il diritto all’oblio tra Lussemburgo, Strasburgo, Karlsruhe e il mondo intero
In Rivista di studia documentazione sull´integrazione europea 2/2023, numero speciale, , 2023.
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Carolin Schimmelpfennig, Michael Rade, Susanne Füssel, Dennis Löffler, Conny Blumert, Catharina Bertram, Angelika Borkowetz, Dominik J. Otto, Sven-Holger Puppel, Pia Hönscheid, Ulrich Sommer, Gustavo B. Baretton, Ulrike Köhl, Manfred Wirth, Christian Thomas, Friedemann Horn, Markus Kreuz, Kristin Reiche
Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer
In BMC Cancer, BioMed Central Ltd, volume 23, 2023. BioMed Central Ltd. 10.1186/s12885-023-11019-6
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Abstract Domains for Database Manipulating Processes
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 222-237, 2023. Springer. 10.1007/978-3-031-45072-3_16
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Tobias Paul Seraphin, Mark Luedde, Christoph Roderburg, Marko van Treeck, Pascal Scheider, Roman D. Buelow, Peter Boor, Sven H. Loosen, Zdenek Provaznik, Daniel Mendelsohn, Filip Berisha, Christina Magnussen, Dirk Westermann, Tom Luedde, Christoph Brochhausen, Samuel Sossalla, Jakob Nikolas Kather
Prediction of heart transplant rejection from routine pathology slides with self-supervised deep learning
In European Heart Journal - Digital Health, Oxford University Press, volume 4, 265-274, 2023. Oxford University Press. 10.1093/ehjdh/ztad016
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Soroosh Tayebi Arasteh, Peter Isfort, Marwin Saehn, Gustav Mueller-Franzes, Firas Khader, Jakob Nikolas Kather, Christiane Kuhl, Sven Nebelung, Daniel Truhn
Collaborative training of medical artificial intelligence models with non-uniform labels
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-33303-y
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A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-47500-2
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Gregory P. Veldhuizen, Christoph Röcken, Hans-Michael Behrens, Didem Cifci, Hannah S. Muti, Takaki Yoshikawa, Tomio Arai, Takashi Oshima, Patrick Tan, Matthias P. Ebert, Alexander T. Pearson, Julien Calderaro, Heike I Grabsch, Jakob Nikolas Kather
Deep learning-based subtyping of gastric cancer histology predicts clinical outcome: a multi-institutional retrospective study
In Gastric Cancer, Springer, volume 26, 708-720, 2023. Springer. 10.1007/s10120-023-01398-x
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Wikidata: The Making Of
In Proceedings of the 32nd Companion of the ACM World Wide Web Conference, WWW 2023, ACM, 615-624, 2023. ACM. 10.1145/3543873.3585579
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Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study
In Cancer Cell, Cell Press, volume 41, 1650-1661.e4, 2023. Cell Press. 10.1016/j.ccell.2023.08.002
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Learning algorithms for spiking neural networks: should one use learning algorithms from ANN/DL or neurological plausible learning? - A thought-provoking impulse
In XLIII Jornadas de Automática: libro de actas, Universidade da Coruña. Servizo de Publicacións, 201-207, 2022. Universidade da Coruña. Servizo de Publicacións. 10.17979/spudc.9788497498418.0201
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An Existential Rule Framework for Computing Why-Provenance On-Demand for Datalog
In Proceedings of the 6th International Joint Conference on Rules and Reasoning, RuleML+RR 2022, Springer, 146-163, 2022. Springer. 10.1007/978-3-031-21541-4_10
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Efficient Dependency Analysis for Rule-Based Ontologies
In Proceedings of the 21st International Semantic Web Conference, ISWC 2022, Springer, 267-283, 2022. Springer. 10.1007/978-3-031-19433-7_16
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Grover E.C. Guzman, Peter F Stadler, André Fujita
Efficient eigenvalue counts for tree-like networks
In Journal of Complex Networks, Oxford University Press, volume 10, 2022. Oxford University Press. 10.1093/comnet/cnac040
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Tuple-Generating Dependencies Capture Complex Values
In Proceedings of the 4th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2022, CEUR-WS, 97-103, 2022. CEUR-WS.
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Online-Intermediäre als Träger der Meinungsfreiheit
In DÖV, , 2022.
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Stephanie Schiedermair, Mark Cole, Eva Wagner
Das Phänomen der fake news im Spiegel der Judikatur des EGMR
In Die Entfaltung von Freiheit im Rahmen des Rechts, Festschrift für Dieter Dörr zum 70. Geburtstag, 2022.
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