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SECAI-Wissenschaftler:innen bei der Arbeit © DAAD/Nathan Dreessen

Publications in SECAI

Rajab Aghamov, Christel Baier, Toghrul Karimov, Joel Ouaknine, Jakob Piribauer
Linear dynamical systems with weight functions
In Nonlinear Analysis: Hybrid Systems, Elsevier Ltd, volume 60, 2026. Elsevier Ltd. 10.1016/j.nahs.2026.101680
Composite AI Journal Publication
Alessandro Pietro Aldera, Didem Cifci, Gregory P. Veldhuizen, Wanjung Tsai, Komala Pillay, Adam B.T. Boutall, Hermann Brenner, Michael Hoffmeister, Jakob Nikolas Kather, Rajkumar S. Ramesar
Deep learning predicts microsatellite instability status in colorectal carcinoma in an ethnically heterogeneous population in South Africa
In Journal of Clinical Pathology, BMJ Publishing Group, volume 79, 50-56, 2026. BMJ Publishing Group. 10.1136/jcp-2025-210053
Intelligent Medical Devices Journal Publication
Bjoern Andres, Jannik Irmai, Lucas Fabian Naumann
Chorded cycle facets of the clique partitioning polytope
In Discrete Applied Mathematics, Elsevier B.V., volume 378, 662-670, 2026. Elsevier B.V.. 10.1016/j.dam.2025.09.020
Composite AI Journal Publication
Gustavo Araiza, Josuel Morel, Minh H. Tran, Shan Jiang, Sean Murray, Emika Miyamoto, Hannah Vogts, Kyle L. Brown, Jens Meiler, Cristina E. Martina
Glycan masking in immunogen design: computational and experimental methods
In Frontiers in Immunology, Frontiers Media SA, volume 16, 2026. Frontiers Media SA. 10.3389/fimmu.2025.1726810
AI Methods for Health Journal Publication
Christel Baier, Rio Klatt, Sascha Klüppelholz, Johannes Lehmann
Backward Responsibility in Transition Systems Beyond Safety
In Proceedings of the 30th International Conference on Formal Methods for Industrial Critical Systems, FMICS 2025, Springer, 105-123, 2026. Springer. 10.1007/978-3-032-00942-5_6
Composite AI Conference Publication
Lea Bauer, Jonas Karge
Elicit and Weigh: A Voting-Based Approach to Optimal Weights in Imprecise Linear Pooling
In Proceedings of the 18th European Conference on Symbolic and Quantitative Approaches to Reasoning with Uncertainty, ECSQARU 2025, Springer, 253-266, 2026. Springer. 10.1007/978-3-032-05134-9_18
Composite AI Conference Publication
Grover Enrique Castro Guzman, Peter F Stadler, Andre Fujita
Spectral densities approximations of incidence-based locally treelike hypergraph matrices via the cavity method
In Physical Review E, American Physical Society, volume 113, 2026. American Physical Society. 10.1103/g997-gp7j
AI Methods for Health Journal Publication
Grover Enrique Castro Guzman, Peter F Stadler, Andre Fujita
A message-passing approach to obtain the trace of matrix functions with applications to network analysis
In Numerical Algorithms, Springer, volume 101, 455-476, 2026. Springer. 10.1007/s11075-025-02012-0
AI Methods for Health Journal Publication
Matthias Elgeti, Julia D. Belyaeva, Mahdi Bagherpoor Helabad, Dean P. Staus, Laura M. Wingler
Angiotensin receptor conformations stabilized by biased ligands differentially modulate β-arrestin interactions
In Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology Inc., volume 302, 2026. American Society for Biochemistry and Molecular Biology Inc.. 10.1016/j.jbc.2025.111117
Journal Publication
Richard Golnik, Peter F Stadler, Thomas Gatter
Atom Transition Networks and Isotope Labeling Patterns in Large Chemical Reaction Networks
In Match, University of Kragujevac, Faculty of Science, volume 95, 347-404, 2026. University of Kragujevac, Faculty of Science. 10.46793/match.95-2.15425
AI Methods for Health Journal Publication
Jonas Karge
Questions About Quantities: Epistemic Numerical Estimate Aggregation
In Proceedings of the 26th International Conference on Principles and Practice of Multi-Agent Systems, PRIMA 2025, Springer, 99-116, 2026. Springer. 10.1007/978-3-032-13562-9_8
Composite AI Conference Publication
Carsten Knoll, Julian Ullrich, Thomas Manjooran, Kilian Göller, Haadia Amjad, Ronald Tetzlaff, Steffen Seitz
XAIEV – A Framework for the Evaluation of XAI-Algorithms for Image Classification
In Proceedings of the 3rd World Conference on Explainable Artificial Intelligence, xAI 2025, Springer, 250-263, 2026. Springer. 10.1007/978-3-032-08327-2_12
AI Compute Paradigms Conference Publication
Leo Misera, Sven Nebelung, Zunamys I. Carrero, Keno Kyrill Bressem, Marta Ligero, Jens Peter Kühn, Ralf Thorsten Hoffmann, Daniel Truhn, Jakob Nikolas Kather
Reducing manual workload in CT and MRI annotation with the Segment Anything Model 2
In BMC Medical Imaging, BioMed Central Ltd, volume 26, 2026. BioMed Central Ltd. 10.1186/s12880-025-02075-4
Intelligent Medical Devices Journal Publication
Corinna Schüß, Oanh Vu, Tim Pelczyk, Mario Schubert, Yu Du, Jan Stichel, Charles David Weaver, Jens Meiler, Annette G. Beck-Sickinger
The pathway-independent positive allosteric modulator C1 allows for the identification of active Y4 receptor relevant positions
In Cellular and Molecular Life Sciences, Springer, volume 83, 2026. Springer. 10.1007/s00018-025-06019-7
AI Methods for Health Journal Publication
Denis Skibinski, Thomas Spicher, Leonhard Sidl, Paulína Holotová, Yingjie Pan, Maximilian Faissner, Cristian A. Velandia-Huerto, Ronny Lorenz, Maria Waldl, Huating Yao, Peter F Stadler
Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction
In Proceedings of the 21st International Symposium on Bioinformatics Research and Applications, ISBRA 2025, Springer, 151-162, 2026. Springer. 10.1007/978-981-95-0695-8_13
AI Methods for Health Conference Publication
Cynthia Tchio, Matthew Maher, Christopher W. Moth, Jens Meiler, Jacqueline M. Lane, Herman A. Taylor, Jonathan S. Williams, Thomas Meitinger
Circadian ADCY3 Ser107Pro variant bridges difficulty awakening in the morning and adiposity
In iScience, Elsevier Inc., volume 29, 2026. Elsevier Inc.. 10.1016/j.isci.2025.114587
AI Methods for Health Journal Publication
Daniel Truhn, Shekoofeh Azizi, James Y. Zou, L. Cerdá Alberich, Faisal Mahmood, Jakob Nikolas Kather
Artificial intelligence agents in cancer research and oncology
In Nature Reviews Cancer, Nature Research, 2026. Nature Research. 10.1038/s41568-025-00900-0
Intelligent Medical Devices Journal Publication
Phuoc Chung van Nguyen, Van Thinh To, Ngoc Vi Nguyen Tran, Tieu-Long Phan, Tuyenngoc Truong, Thomas Gärtner, Daniel Merkle, Peter F Stadler
SynCat: molecule-level attention graph neural network for precise reaction classification
In Digital Discovery, Royal Society of Chemistry, volume 5, 241-253, 2026. Royal Society of Chemistry. 10.1039/d5dd00367a
AI Methods for Health Journal Publication
Danush Kumar Venkatesh, Isabel Funke, Micha Pfeiffer, Fiona R. Kolbinger, Hanna M. Schmeiser, Marius Distler, Jürgen Weitz, Stefanie Speidel
Mission Balance: Generating Under-Represented Class Samples Using Video Diffusion Models
In Proceedings of the 28th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2025, Springer, 412-422, 2026. Springer. 10.1007/978-3-032-05141-7_40
Intelligent Medical Devices Conference Publication
Christian Vielhaus, Caspar von Lengerke, Vincent Latzko, Justus Rischke, Martin Reisslein, Frank H. P. Fitzek
Evaluating Transport Layer Congestion Control Algorithms: A Comprehensive Survey
In IEEE Communications Surveys and Tutorials, IEEE, volume 28, 278-340, 2026. IEEE. 10.1109/COMST.2025.3533303
Composite AI Journal Publication
Meri Abgaryan, Xinning Cui, Nandu Gopan, Gabriel Della Maggiora, Artur Yakimovich, Ivo F. Sbalzarini
Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy
In Small Methods, John Wiley and Sons Inc, volume 9, 2025. John Wiley and Sons Inc. 10.1002/smtd.202401900
Journal Publication
Sophie Adama, Martin Bogdan
Assessing consciousness in patients with locked-in syndrome using their EEG
In Frontiers in Neuroscience, Frontiers Media SA, volume 19, 2025. Frontiers Media SA. 10.3389/fnins.2025.1604173
AI Methods for Health Journal Publication
Sophie Adama, Martin Bogdan
Analysis of Auditory Oddball Paradigm During Hypnosis
In Proceedings of the 21st IFIP WG 12.5 International Conference on Artificial Intelligence Applications and Innovations, AIAI 2025, Springer, 119-131, 2025. Springer. 10.1007/978-3-031-96239-4_9
AI Methods for Health Conference Publication
Haadia Amjad
Temporal Explainable AI Models for Surgery Evaluation
In Proceedings of the Joint of the xAI 2025 Late-Breaking Work, Demos and Doctoral Consortium, LB/D/DC@xAI 2025, CEUR-WS, 401-408, 2025. CEUR-WS.
AI Compute Paradigms Conference Publication
Kossi Amouzouvi, Yashrajsinh Chudasama, Disha Purohit, Ariam Rivas, Bowen Song, Jens Lehmann, Sahar Vahdati, María Esther Vidal
SimE: A Knowledge Graph Embedding Model to Encode Self-Similar Structures Through Algebraic and Geometric Transformations
In IEEE Access, IEEE, volume 13, 74701-74719, 2025. IEEE. 10.1109/ACCESS.2025.3564130
Composite AI Journal Publication
Arun Anil, Manoj Changat, John J. Chavara, Lekshmi Kamal K-Sheela, G. Narasimha Shenoi Prasanth, Bruno J. Schmidt, Ameera Vaheeda Shanavas, Peter F Stadler
Directed Transit Functions
In Results in Mathematics, Birkhauser, volume 80, 2025. Birkhauser. 10.1007/s00025-025-02354-0
AI Methods for Health Journal Publication
Dörthe Arndt, Stephan Mennicke
Existential Notation3 Logic
In Theory and Practice of Logic Programming, Cambridge University Press, 2025. Cambridge University Press. 10.1017/S1471068425000055
Composite AI Journal Publication
Chistel Baier, Sascha Klüppelholz, Jakob Piribauer, Robin Ziemek
Formal Quality Measures for Predictors in Markov Decision Processes
In Proceedings of the 39th Annual AAAI Conference on Artificial Intelligence, AAAI 2025, AAAI, 26760-26768, 2025. AAAI. 10.1609/aaai.v39i25.34879
Conference Publication
Christel Baier, Sascha Klüppelholz, Johannes Lehmann
Responsibility in Actor-Based Systems
In Lecture Notes in Computer Science, Springer, volume 15560 LNCS, 44-69, 2025. Springer. 10.1007/978-3-031-85134-6_3
Composite AI Journal Publication
Lea Bauer, Jonas Karge
Multi-agent Opinion Pooling by Voting for Bins: Simulations and Characterization
In Proceedings of the 22nd International Conference on Practical Applications of Agents and Multi-Agent Systems, PAAMS 2024, Springer, 49-60, 2025. Springer. 10.1007/978-3-031-70415-4_5
Composite AI Conference Publication
Lorenz Beckmann, Fabian Liessmann, Maik Icker, Dominic Rieger, Phillip Schlegel, Nicole Urban, Michael J. Schaefer, Jens Meiler, Clara Tabea Schoeder, Maik Tretbar
Identification and optimization of a small molecule inhibitor of the ovarian tumor protease of the Crimean-Congo hemorrhagic fever virus
In Bioorganic and Medicinal Chemistry, Elsevier Ltd, volume 120, 2025. Elsevier Ltd. 10.1016/j.bmc.2025.118093
AI Methods for Health Journal Publication
Eric W. Bell, Benjamin P. Brown, Jens Meiler
FakeRotLib: Expedient Noncanonical Amino Acid Parametrization in Rosetta
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 8397-8404, 2025. American Chemical Society. 10.1021/acs.jcim.5c01030
AI Methods for Health Journal Publication
Jean Paul Bereuter, Mark Enrik Geissler, Anna Klimova, Robert Patrick Steiner, Kevin Pfeiffer, Fiona R. Kolbinger, Isabella Catharina Wiest, Hannah Sophie Muti, Jakob Nikolas Kather
Benchmarking Vision Capabilities of Large Language Models in Surgical Examination Questions
In Journal of Surgical Education, Elsevier Inc., volume 82, 2025. Elsevier Inc.. 10.1016/j.jsurg.2025.103442
Intelligent Medical Devices Journal Publication
Meghna Bhadra
Disentangling Belief and Inference: Adaptive Algorithms for Individual Human Reasoning
In Proceedings of the 28th European Conference on Artificial Intelligence, ECAI 2025, including 14th Conference on Prestigious Applications of Intelligent Systems, PAIS 2025, IOS Press BV, 1454-1461, 2025. IOS Press BV. 10.3233/FAIA250966
Conference Publication
Kevin M. Boehm, Omar S.M. El Nahhas, Antonio Marra, Michele Waters, Justin Jee, Lior Z. Braunstein, Nikolaus D. Schultz, Pier Selenica, Hannah Yong Wen, Britta Weigelt, Evan D. Paul, Pavol Čekan, Ramona Erber, Chiara Maria Lavinia Loeffler, Elena Guerini Rocco, Nicola Fusco, Chiara Frascarelli, Eltjona Mane, E. Munzone, Silvia Dellapasqua, Paola Zagami, Giuseppe Curigliano, Pedram A. Razavi, Jorge Sérgio Reis-Filho, Fresia G. Pareja, Sarat Chandarlapaty, Sohrab P. Shah, Jakob Nikolas Kather
Multimodal histopathologic models stratify hormone receptor-positive early breast cancer
In Nature Communications, Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-57283-x
Intelligent Medical Devices Journal Publication
Till Braun, Florian Kuschel, Kristin Reiche, Maximilian Merz, Marco Herling
Emerging T-cell lymphomas after CAR T-cell therapy
In Leukemia, Springer Nature, volume 39, 1337-1341, 2025. Springer Nature. 10.1038/s41375-025-02574-x
AI Methods for Health Journal Publication
Till Braun, Michael Rade, Maximilian Merz, Hanna Klepzig, Florian Große, David Fandrei, Nhu Nguyen Pham, Markus Kreuz, Christina Katharina Kuhn, Florian Kuschel, Dennis Löffler, Jörn Meinel, Eva Heger, Viola Schweinsberg, Natali Pflug, Uwe Platzbecker, Michael J. Hallek, Udo Holtick, Ulrike Koehl, Christof Scheid, Kristin Reiche, Marco Herling, Tim Richardson
Multiomic profiling of T cell lymphoma after therapy with anti-BCMA CAR T cells and GPRC5D-directed bispecific antibody
In Nature Medicine, Nature Research, volume 31, 1145-1153, 2025. Nature Research. 10.1038/s41591-025-03499-9
AI Methods for Health Journal Publication
James Alexander Brooks, Michael Kallenbach, Pompilia I. Radu, Annalisa Berzigotti, Christoph Frank Dietrich, Jakob Nikolas Kather, Tom Luedde, Tobias Paul Seraphin
Artificial Intelligence for Contrast-Enhanced Ultrasound of the Liver: A Systematic Review
In Digestion, S. Karger AG, volume 106, 227-244, 2025. S. Karger AG. 10.1159/000541540
Intelligent Medical Devices Journal Publication
Lucas Carr, Nicholas Leisegang, Thomas Andreas Meyer, Sebastian Rudolph
Non-monotonic Extensions to Formal Concept Analysis via Object Preferences
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 476-492, 2025. Springer. 10.1007/978-3-031-78255-8_28
Composite AI Conference Publication
Grover Enrique Castro Guzman, Marcos E. González Laffitte, Andre Fujita, Peter F Stadler
Primitive, edge-short, isometric, and pantochordal cycles
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1754.cd0
AI Methods for Health Journal Publication
Manoj Changat, Ameera Vaheeda Shanavas, Peter F Stadler
Transit functions and clustering systems
In Art of Discrete and Applied Mathematics, University of Primorska, volume 8, 2025. University of Primorska. 10.26493/2590-9770.1782.ec6
AI Methods for Health Journal Publication
Yazhou Chen, Benjamin P.M. Laevens, Teresa Lemainque, Gustav Anton Muller-Franzes, Tobias Seibel, Carola Dlugosch, Jan Clusmann, Paul Henry Koop, Rongpeng Gong, Yuanyuan Liu, Niharika Jakhar, Feng Cao, Simon Schophaus, Thriveni Basavanapura Raju, Anastasia Artemis Raptis, Felix van Haag, Joel Joy, Rohit Loomba, Luca Vittorio Carlo Valenti, Jakob Nikolas Kather, Titus Josef Brinker, Moritz Herzog, I. G. Costa, Diego Hernando, Kai Markus Schneider, Daniel Truhn, Carolin Victoria Schneider
Deep Learning Reveals Liver MRI Features Associated With PNPLA3 I148M in Steatotic Liver Disease
In Liver International, John Wiley and Sons Inc, volume 45, 2025. John Wiley and Sons Inc. 10.1111/liv.70164
Intelligent Medical Devices Journal Publication
Jan Clusmann, Maria Balaguer-Montero, Octavi Bassegoda, Carolin Victoria Schneider, Tobias Paul Seraphin, Ellis Kobina Paintsil, Tom Luedde, Raquel Perez Lopez, Julien Calderaro, Stephen Henry Gilbert, Thomas Marjot, Ashley L. Spann, Debbie Lindsay Shawcross, Sabela Lens, Eric Trépo, Jakob Nikolas Kather
The barriers to uptake of artificial intelligence in hepatology and how to overcome them
In Journal of Hepatology, Elsevier B.V., volume 83, 1410-1426, 2025. Elsevier B.V.. 10.1016/j.jhep.2025.07.003
Intelligent Medical Devices Journal Publication
Jan Clusmann, Dyke Ferber, Isabella Catharina Wiest, Carolin Victoria Schneider, Titus Josef Brinker, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
Prompt injection attacks on vision language models in oncology
In Nature Communications, Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-024-55631-x
Intelligent Medical Devices Journal Publication
Salman Ul Hassan Dar, Marvin Seyfarth, Isabelle Ayx, Theano Papavassiliu, Stefan Oswald Schoenberg, Robert Malte Siepmann, Fabian Christopher Laqua, Jannik Kahmann, Norbert Frey, Bettina Baeßler, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather, Sandy Engelhardt
Unconditional latent diffusion models memorize patient imaging data
In Nature Biomedical Engineering, Nature Research, 2025. Nature Research. 10.1038/s41551-025-01468-8
Intelligent Medical Devices Journal Publication
Julia Di, Zdravko Dugonjić, Will Fu, Tingfan Wu, Romeo Mercado, Kevin Sawyer, Victoria Rose Most, Gregg Kammerer, Stefanie Speidel, Richard E. Fan, Geoffrey A. Sonn, Mark R. Cutkosky, Mike Lambeta, Roberto Calandra
Using Fiber Optic Bundles to Miniaturize Vision-Based Tactile Sensors
In IEEE Transactions on Robotics, IEEE, volume 41, 62-81, 2025. IEEE. 10.1109/TRO.2024.3492375
Intelligent Medical Devices Composite AI Journal Publication
Nico Domschke, Bruno J. Schmidt, Thomas Gatter, Richard Golnik, Paul Eisenhuth, Fabian Liessmann, Jens Meiler, Peter F Stadler
Crossover operators for molecular graphs with an application to virtual drug screening
In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-00958-w
AI Methods for Health Journal Publication
Nico Domschke, Thomas Gatter, Richard Golnik, Peter F Stadler
A short note on relevant cuts
In Art of Discrete and Applied Mathematics, University of Primorska, 1-13, 2025. University of Primorska. 10.26493/2590-9770.1845.02e
AI Methods for Health Journal Publication
Omar S.M. El Nahhas, Marko van Treeck, Georg Wölflein, Michaela Unger, Marta Ligero, Tim Lenz, Sophia J. Wagner, Katherine Jane Hewitt, Firas Khader, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology
In Nature Protocols, Springer Nature, volume 20, 293-316, 2025. Springer Nature. 10.1038/s41596-024-01047-2
Intelligent Medical Devices Journal Publication
Faiq Miftakhul Falakh, Sebastian Rudolph, Kai Sauerwald
AGM Belief Revision, Semantically
In ACM Transactions on Computational Logic, Association for Computing Machinery, volume 26, 2025. Association for Computing Machinery. 10.1145/3763234
Composite AI Journal Publication
David Fandrei, Sabine Seiffert, Michael Rade, Susanne Rieprecht, Nico Gagelmann, Patrick Born, Thomas C. Wiemers, Heike Weidner, Markus Kreuz, Tamara Schassberger, Jannik Koßmann, Marlene Mangold, Daniel Fürst, Luise Fischer, Ronny Baber, Simone Heyn, Song Yau Wang, Enrica Bach, Sandra Hoffmann, Klaus H. Metzeler, Marco Herling, Madlen Jentzsch, Georg Nikolaus Franke, Ulrike Koehl, Maik Friedrich, Andreas Boldt, Kristin Reiche, Uwe Platzbecker, Vladan Vučinić, Maximilian Merz
Bispecific Antibodies as Bridging to BCMA CAR-T Cell Therapy for Relapsed/Refractory Multiple Myeloma
In Blood Cancer Discovery, American Association for Cancer Research Inc., volume 6, 38-54, 2025. American Association for Cancer Research Inc.. 10.1158/2643-3230.BCD-24-0118
AI Methods for Health Journal Publication
Deianira Fejzaj, Richard Schroedter, Thomas Mikolajick, André Heinzig
A Vertical Memristive MoS2-exfoliated Device for Applications in Artificial Synapses
In Proceedings of the 14th International Conference on Modern Circuits and Systems Technologies, MOCAST 2025, IEEE, 2025. IEEE. 10.1109/MOCAST65744.2025.11083941
AI Compute Paradigms Conference Publication
Christoph Flamm, Daniel Merkle, Peter F Stadler
Assembly in Directed Hypergraphs
In Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Royal Society Publishing, volume 481, 2025. Royal Society Publishing. 10.1098/rspa.2025.0331
AI Methods for Health Journal Publication
Christoph Flamm, Daniel Merkle, Peter F Stadler
Computation in chemical graph rewriting networks
In Journal of Physics: Complexity, Institute of Physics, volume 6, 2025. Institute of Physics. 10.1088/2632-072X/adb7b1
AI Methods for Health Journal Publication
Daniel Frau-Alfaro, Julio Castaño-Amoros, Santiago T. Puente, Pablo Gil, Roberto Calandra
Learning Dexterous Object Handover
In Proceedings of the 34th IEEE International Conference on Robot and Human Interactive Communication, RO-MAN 2025, IEEE Computer Society, 380-387, 2025. IEEE Computer Society. 10.1109/RO-MAN63969.2025.11217592
Composite AI Conference Publication
Oscar Freyer, Sanddhya Jayabalan, Jakob Nikolas Kather, Stephen Henry Gilbert
Overcoming regulatory barriers to the implementation of AI agents in healthcare
In Nature Medicine, Nature Research, volume 31, 3239-3243, 2025. Nature Research. 10.1038/s41591-025-03841-1
Intelligent Medical Devices Journal Publication
Hamed Babaei Giglou, Simon Burbach, Francesco Compagno, Muhammad Ismail, Gunjan Singh, Sebastian Rudolph
Beyond Statistical Parroting: Hard-Coding Truth into LLMs via Ontologies
In Proceedings of the 2nd International Workshop on Retrieval-Augmented Generation Enabled by Knowledge Graphs, RAGE-KG 2025, CEUR-WS, 120-131, 2025. CEUR-WS.
Composite AI Conference Publication
Marcos E. González Laffitte, Tieu-Long Phan, Peter F Stadler
Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms
In Proceedings of the 25th International Conference on Algorithms for Bioinformatics, WABI 2025, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2025. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. 10.4230/LIPIcs.WABI.2025.12
AI Methods for Health Conference Publication
Marco Gustav, Marko van Treeck, Nic Gabriel Reitsam, Zunamys I. Carrero, Chiara Maria Lavinia Loeffler, Asier Rabasco Meneghetti, Bruno Märkl, Lisa A. Boardman, Amy J. French, Ellen L. Goode, Andrea Gsur, Stefanie Brezina, Marc James Gunter, Neil Murphy, Pia V. Hönscheid, Christian Sperling, Sebastian Foersch, Robert S. Steinfelder, Tabitha A. Harrison, Ulrike Peters, Amanda I. Phipps, Jakob Nikolas Kather
Assessing genotype−phenotype correlations in colorectal cancer with deep learning: a multicentre cohort study
In The Lancet Digital Health, Elsevier Ltd, volume 7, 2025. Elsevier Ltd. 10.1016/j.landig.2025.100891
Intelligent Medical Devices Journal Publication
Adnan Haidar, Amir Khan, Vasilis G. Ntinas, Jorge Fernández-Berni, Ricardo A. Carmona-Galán, Ronald Tetzlaff
Attention-driven PCM-based In-Memory Computing for Smart Vision Systems
In Proceedings of the 2025 IEEE International Symposium on Circuits and Systems, ISCAS 2025, IEEE, 2025. IEEE. 10.1109/ISCAS56072.2025.11044041
AI Compute Paradigms Conference Publication
Moritz Hehl
Graphs with Lin-Lu-Yau curvature at least one and regular bone-idle graphs
In Calculus of Variations and Partial Differential Equations, Springer, volume 64, 2025. Springer. 10.1007/s00526-025-03052-z
Composite AI Journal Publication
Katherine Jane Hewitt, Isabella Catharina Wiest, Jakob Nikolas Kather
Authors' reply: Re: Koga et al. Retrieval-augmented generation versus document-grounded generation: a key distinction in large language models
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 11, 2025. John Wiley and Sons Inc. 10.1002/2056-4538.70013
Intelligent Medical Devices Journal Publication
Shan Jiang, Zhaoqian Su, Nathaniel C. Bloodworth, Yunchao Liu, Cristina E. Martina, David G. Harrison, Jens Meiler
Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201
In PLOS ONE, Public Library of Science, volume 20, 2025. Public Library of Science. 10.1371/journal.pone.0314833
AI Methods for Health Journal Publication
Jitendra JONNAGADDALA, Miljana Shulajkovska, Anton Gradišek, Toni Rose Jue, Qifeng Zhou, Yuzhi Guo, Jamil Mahmoud El Chayeb, Ruijiang Li, Jana Lipková, Jakob Nikolas Kather, Junzhou Huang
Multimodal analysis of whole slide images in colorectal cancer
In npj Digital Medicine, Nature Research, volume 8, 2025. Nature Research. 10.1038/s41746-025-02095-y
Intelligent Medical Devices Journal Publication
Peter Kappelt, Christian Vielhaus, Justus Rischke, Marek Sobe, Frank H. P. Fitzek
Machine Learning for In-Network Spatial Localization within Wireless Mesh Networks
In Proceedings of the 2025 IEEE International Conference on Communications Workshops, ICC Workshops 2025, IEEE, 1882-1887, 2025. IEEE. 10.1109/ICCWorkshops67674.2025.11162342
Composite AI Conference Publication
Jonas Karge
Taming Dilation in Imprecise Pooling
In Proceedings of the 25th International Conference on Principles and Practice of Multi-Agent Systems, PRIMA 2024, Springer, 428-443, 2025. Springer. 10.1007/978-3-031-77367-9_32
Composite AI Conference Publication
Pascal Kettmann, Jesse Heyninck, Hannes Strass
Approximation Fixpoint Theory as a Unifying Framework for Fuzzy Logic Programming Semantics
In Proceedings of the 34th Internationa Joint Conference on Artificial Intelligence, IJCAI 2025, International Joint Conferences on Artificial Intelligence, 4544-4552, 2025. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2025/506
Composite AI Conference Publication
Fiona R. Kolbinger, Jakob Nikolas Kather
Adaptive validation strategies for real-world clinical artificial intelligence
In Nature Computational Science, Springer Nature, volume 5, 980-986, 2025. Springer Nature. 10.1038/s43588-025-00901-x
Intelligent Medical Devices Journal Publication
Fiona R. Kolbinger, Omar S.M. El Nahhas, Maja Carina Nackenhorst, Christine Brostjan, Wolf Hans Eilenberg, Albert Busch, Jakob Nikolas Kather
Histopathological evaluation of abdominal aortic aneurysms with deep learning
In Diagnostic Pathology, BioMed Central Ltd, volume 20, 2025. BioMed Central Ltd. 10.1186/s13000-025-01684-5
Intelligent Medical Devices Journal Publication
Nils Küchenmeister, Alex Ivliev, Markus Krötzsch
Towards Mass Spectrum Analysis with ASP
In Proceedings of the 17th International Conference on Logic Programming and Non-monotonic Reasoning, LPNMR 2024, Springer, 200-214, 2025. Springer. 10.1007/978-3-031-74209-5_16
Composite AI Conference Publication
Tim Langer, Matthias Jobst, Chen Liu, Florian Kelber, Bernhard Vogginger, Christian Georg Mayr
OctopuScheduler: On-Chip DNN Scheduling on the SpiNNaker2 Neuromorphic MPSoC
In Proceedings of the 12th Annual IEEE Neuro-Inspired Computational Elements, NICE 2025, IEEE, 2025. IEEE. 10.1109/NICE65350.2025.11065866
AI Compute Paradigms Conference Publication
Nicholas Leisegang, Thomas Andreas Meyer, Sebastian Rudolph
Towards Propositional KLM-Style Defeasible Standpoint Logics
In Proceedings of the 5th Southern African Conference for Artificial Intelligence Research, SACAIR 2024, Springer, 459-475, 2025. Springer. 10.1007/978-3-031-78255-8_27
Composite AI Conference Publication
Fabian Liessmann, Paul Eisenhuth, Alexander Fürll, Oanh Vu, Rocco Moretti, Jens Meiler
Cache: Utilizing ultra-large library screening in Rosetta to identify novel binders of the WD-repeat domain of Leucine-Rich Repeat Kinase 2
In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-01084-3
AI Methods for Health Journal Publication
Marta Ligero, Omar S.M. El Nahhas, Mihaela D. Aldea, Jakob Nikolas Kather
Artificial intelligence-based biomarkers for treatment decisions in oncology
In Trends in Cancer, Cell Press, volume 11, 232-244, 2025. Cell Press. 10.1016/j.trecan.2024.12.001
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Xiaobo Lin, Zhaoqian Su, Yunchao Lance Liu, Jingxian Liu, Xiaohan Kuang, Peter T. Cummings, Jesse Spencer-Smith, Jens Meiler
SuperMetal: a generative AI framework for rapid and precise metal ion location prediction in proteins
In Journal of Cheminformatics, BioMed Central Ltd, volume 17, 2025. BioMed Central Ltd. 10.1186/s13321-025-01038-9
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Chiara Maria Lavinia Loeffler, Hideaki Bando, Srividhya Sainath, Hannah Sophie Muti, Xiaofeng Jiang, Marko van Treeck, Nic Gabriel Reitsam, Zunamys I. Carrero, Asier Rabasco Meneghetti, Tomomi Nishikawa, Toshihiro Misumi, Saori Mishima, Daisuke Kotani, Hiroya Taniguchi, Ichirou Takemasa, Takeshi Kato, Eiji Oki, Yuan Tanwei, Wankhede Durgesh, Sebastian Foersch, Hermann Brenner, Michael Hoffmeister, Yoshiaki Nakamura, Takayuki Yoshino, Jakob Nikolas Kather
HIBRID: histology-based risk-stratification with deep learning and ctDNA in colorectal cancer
In Nature Communications, Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-62910-8
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Ingrid Marion, Stefan Schulz, Christina Glasner, Jakob Nikolas Kather, Daniel Truhn, Markus Eckstein, Celine Mueller, Aurélie Fernandez, Simone Marquard, Marie Oliver Metzig, Wilfried Roth, Matthias Martin Gaida, Stephanie Strobl, Daniel Christoph Wagner, Arno Schad, Moritz Jesinghaus, Nils Hartmann, Thomas J. Musholt, Julia I. Staubitz-Vernazza, Sebastian Foersch
Deep Learning Discovers New Morphological Features while Predicting Genetic Alterations from Histopathology of Papillary Thyroid Carcinoma
In Thyroid, Mary Ann Liebert Inc., volume 35, 771-780, 2025. Mary Ann Liebert Inc.. 10.1089/thy.2024.0691
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Brennica Marlow, Alexander Vogel, Georg Kuenze, Maik Pankonin, Franziska Reinhardt, Peter F Stadler, Peter Werner Hildebrand, Jens Meiler
Cholesterol allosteric modulation of the oxytocin receptor
In Biophysical Journal, Elsevier B.V., volume 124, 1930-1943, 2025. Elsevier B.V.. 10.1016/j.bpj.2025.04.023
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Gesa Mittmann, Sara Laiouar-Pedari, Hendrik Alexander Mehrtens, Sarah Haggenmüller, Tabea Clara Bucher, Tirtha Chanda, Nadine Therese Gaisa, Mathias Wagner, Gilbert Georg Klamminger, Tilmann T. Rau, Christina Neppl, Éva Maria Compérat, Andreas Gocht, Monika Haemmerle, Niels Jan Rupp, Jula Westhoff, Irene Krücken, Maximilian Seidl, Christian M. Schürch, Marcus Bauer, Wiebke Solass, Yuchun Tam, Florian Weber, Rainer Grobholz, Jaroslaw Wojciech Augustyniak, Thomas Kalinski, Christian Hörner, Kirsten Diana Mertz, Constanze Döring, Andreas Erbersdobler, Gabriele Deubler, Felix Bremmer, Ulrich Sommer, Michael Brodhun, Jon L. Griffin, Maria Sarah L. Lenon, Kiril Trpkov, Liang Cheng, Fei Chen, Angelique Wolf Levi, Guoping Cai, Tri Q. Nguyen, Ali Amin, Alessia Cimadamore, Ahmed S. Shabaik, Varsha Manucha, Nazeel Ahmad, Nidia Cordeiro Messias, Francesca Sanguedolce, Diana Taheri, Ezra G. Baraban, Liwei Jia, Rajal B. Shah, Farshid Siadat, Nicole Swarbrick, Kyung Park, Oudai Hassan, Siamak Sakhaie, Michelle R. Downes, Hiroshi Miyamoto, Sean R. Williamson, Tim Holland-Letz, Christoph Wies, Carolin Victoria Schneider, Jakob Nikolas Kather, Yuri Tolkach, Titus Josef Brinker
Pathologist-like explainable AI for interpretable Gleason grading in prostate cancer
In Nature Communications, Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-64712-4
Intelligent Medical Devices Journal Publication
Johannes Müller, Semih Çayci, Guido Montúfar
FISHER-RAO GRADIENT FLOWS OF LINEAR PROGRAMS AND STATE-ACTION NATURAL POLICY GRADIENTS
In SIAM Journal on Optimization, Society for Industrial and Applied Mathematics Publications, volume 35, 1060-1088, 2025. Society for Industrial and Applied Mathematics Publications. 10.1137/24M16534221
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Lucas Fabian Naumann, Jannik Irmai, Bjoern Andres
A Sub-Problem Quantum Alternating Operator Ansatz for Correlation Clustering
In Proceedings of the 42nd International Conference on Machine Learning, ICML 2025, ML Research Press, 45801-45816, 2025. ML Research Press.
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Peter Neidlinger, Omar S.M. El Nahhas, Hannah Sophie Muti, Tim Lenz, Michael Hoffmeister, Hermann Brenner, Marko van Treeck, Rupert Langer, Bastian Dislich, Hans Michael Behrens, Christoph Röcken, Sebastian Foersch, Daniel Truhn, Antonio Marra, Oliver Lester Saldanha, Jakob Nikolas Kather
Benchmarking foundation models as feature extractors for weakly supervised computational pathology
In Nature Biomedical Engineering, Nature Research, 2025. Nature Research. 10.1038/s41551-025-01516-3
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S. Obiedkov, Sebastian Rudolph
When Horn is All You Need
In Proceedings of the 2nd International Joint Conference on Conceptual Knowledge Structures, CONCEPTS 2025, Springer, 307-322, 2025. Springer. 10.1007/978-3-032-03364-2_20
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S. Obiedkov, Barış Sertkaya
PAC learning of concept inclusions for ontology-mediated query answering
In International Journal of Approximate Reasoning, Elsevier Inc., volume 186, 2025. Elsevier Inc.. 10.1016/j.ijar.2025.109523
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Adil Oezsoy, James Alexander Brooks, Marko van Treeck, Yvonne Döerffel, Ulrike Morgera, Jens Berger, Marco Gustav, Oliver Lester Saldanha, Tom Luedde, Jakob Nikolas Kather, Tobias Paul Seraphin, Michael Kallenbach
Weakly Supervised Deep Learning Can Analyze Focal Liver Lesions in Contrast-Enhanced Ultrasound
In Digestion, S. Karger AG, volume 106, 502-514, 2025. S. Karger AG. 10.1159/000545098
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Akiko Ogawa, Satoshi Watanabe, Iuliia Ozerova, Allen Yi Lun Tsai, Yoshihiko Kuchitsu, Harrison Byron Chong, Tomoyoshi Kawakami, Jirio Fuse, Wei Han, Ryuhei Kudo, Tomoki Naito, Kota Sato, Toru Nakazawa, Yasunori Saheki, Akiyoshi Hirayama, Peter F Stadler, Mieko Arisawa, Kimi Araki, Liron Bar-Peled, Tomohiko Taguchi, Shinichiro Sawa, Kenji Inaba, Fanyan Wei
Adenosine kinase and ADAL coordinate detoxification of modified adenosines to safeguard metabolism
In Cell, Elsevier B.V., volume 188, 6151-6169.e24, 2025. Elsevier B.V.. 10.1016/j.cell.2025.07.041
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Max Ostermann, Oscar Freyer, Falk Gerrik Verhees, Jakob Nikolas Kather, Stephen Henry Gilbert
If a therapy bot walks like a duck and talks like a duck then it is a medically regulated duck
In npj Digital Medicine, Nature Research, volume 8, 2025. Nature Research. 10.1038/s41746-025-02175-z
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Tieu-Long Phan, Klaus Weinbauer, Marcos E.González Laffitte, Yingjie Pan, Daniel Merkle, Jakob Lykke Andersen, Rolf Fagerberg, Christoph Flamm, Peter F Stadler
SynTemp: Efficient Extraction of Graph-Based Reaction Rules from Large-Scale Reaction Databases
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 2882-2896, 2025. American Chemical Society. 10.1021/acs.jcim.4c01795
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Tieu-Long Phan, Marcos E. González Laffitte, Klaus Weinbauer, Daniel Merkle, Jakob Lykke Andersen, Rolf Fagerberg, Thomas Gatter, Peter F Stadler
SynKit: A Graph-Based Python Framework for Rule-Based Reaction Modeling and Analysis
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 13012-13019, 2025. American Chemical Society. 10.1021/acs.jcim.5c02123
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Haozhi Qi, Brent Yi, Mike Lambeta, Yi Ma, Roberto Calandra, Jitendra Malik
From Simple to Complex Skills: The Case of In-Hand Object Reorientation
In Proceedings of the 2025 IEEE International Conference on Robotics and Automation, ICRA 2025, IEEE, 14291-14298, 2025. IEEE. 10.1109/ICRA55743.2025.11128016
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Jakob R. Riccabona, Johannes R. Loeffler, Clara Tabea Schoeder, Jens Meiler, Andrew B. Ward, Monica Lisa I. Fernández-Quintero
Rethinking what pLDDT really tells us about protein flexibility
In Structure, Cell Press, volume 33, 2010-2012, 2025. Cell Press. 10.1016/j.str.2025.11.008
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Oliver Lester Saldanha, Jiefu Zhu, Gustav Anton Muller-Franzes, Zunamys I. Carrero, Nicholas R. Payne, Lorena Escudero Sanchez, Paul Christophe Varoutas, Sreenath Pruthviraj Kyathanahally, Narmin Ghaffari Laleh, Kevin Pfeiffer, Marta Ligero, Jakob Behner, Kamarul Amin Abdullah, Georgios Apostolakos, Chrysafoula Kolofousi, Antri Kleanthous, Michael Kalogeropoulos, Cristina Rossi, Sylwia Nowakowska, Alexandra Athanasiou, Raquel Perez-Lopez, Ritse M. Mann, Wouter Bernard Veldhuis, Julia Camps, Volkmar Schulz, Markus T. Wenzel, Sergey Pavlovich Morozov, Alexander P. Ciritsis, Christiane K. Kuhl, Fiona J. Gilbert, Daniel Truhn, Jakob Nikolas Kather
Swarm learning with weak supervision enables automatic breast cancer detection in magnetic resonance imaging
In Communications Medicine, Springer Nature, volume 5, 2025. Springer Nature. 10.1038/s43856-024-00722-5
Intelligent Medical Devices Journal Publication
Tina Schermeng, Alexander Fürll, Fabian Liessmann, Lukas von Bredow, Jan Stichel, Charles David Weaver, Maik Tretbar, Jens Meiler, Annette G. Beck-Sickinger
Similar Binding Mode of a 5-Sulfonylthiouracil Derivative Antagonist at Chemerin Receptors CMKLR1 and GPR1
In Journal of Medicinal Chemistry, American Chemical Society, 2025. American Chemical Society. 10.1021/acs.jmedchem.5c00135
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Jonas Schulz, Patrick Seeling, Martin Reisslein, Frank H. P. Fitzek
No Further Delay: Making Time an Ally of Edge Computation of AI Workloads
In IEEE Internet of Things Magazine, IEEE, 2025. IEEE. 10.1109/MIOT.2025.3637145
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Thomas Scott, Christian Alan Paul Smethurst, Yvonne Westermaier, Moriz Mayer, Peter Greb, Roland Kousek, Tobias Biberger, Gerd Bader, Zuzana Jandová, Philipp S. Schmalhorst, Julian Emanuel Fuchs, Aniket Magarkar, Christoph Hoenke, Thomas Gerstberger, Steven A. Combs, Richard Pape, Saksham Phul, Sandeepkumar Kothiwale, Andreas Bergner, Carlos Zambrano-Bukonja, Scott J. Zaccanelli, Ulas Yeginer, Douglas Craig Wheeler, Kevin D. Wells, Jonathan Weinberg, Linda Wei, Stephen Vincent, Bora Tastan, Robert Spearing, Vera Simon, Michael Simon, Alexa Sen, Vincent Pit, Cédric Partinico, Ian James McNaughton, George Victor McIlvaine, Allen Lubow, Bruno Kestemont, Renton Braden Mathew Innes, Alyssa Joy Higgins, Gregory T. Hansen, Kevin M. Gildea, Thomas J. George, Lezhe Gao, Harald Feldmann, Martin Dickel, Alan Roger Coral, Keith Clayton, Andy M. Chen, Jeffrey Michael Canfield, Andy Cai, Alexander Boykov, Krzysztof Bogusz, Walter Barmettler, Aleshin Dmitry Alekseevich, Alex G. Waterson, Harald Weinstabl, Darryl B. McConnell, Jens Meiler, Jark Böttcher, Rocco Moretti
Drugit: crowd-sourcing molecular design of non-peptidic VHL binders
In Nature Communications, Nature Research, volume 16, 2025. Nature Research. 10.1038/s41467-025-58406-0
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Tobias Paul Seraphin, Agavni Mesropian, Laura Žigutytė, James Alexander Brooks, Ezequiel Matias Mauro, Albert Gris-Oliver, Roser Pinyol, Carla Montironi, Ugne Balaseviciute, Marta Piqué-Gili, Júlia Huguet-Pradell, Marko van Treeck, Michael Kallenbach, Anne Theres Schneider, Christoph Roderburg, Jakob Nikolas Kather, Tom Luedde, Josep M. Llovet
Artificial intelligence predicts outcome-related molecular profiles and vascular invasion in hepatocellular carcinoma
In JHEP Reports, Elsevier B.V., volume 7, 2025. Elsevier B.V.. 10.1016/j.jhepr.2025.101592
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Ameera Vaheeda Shanavas, Manoj Changat, Peter F Stadler
On the Cut-Vertex and the Interval Transit Functions of Hypergraphs
In Graphs and Combinatorics, Springer, volume 41, 2025. Springer. 10.1007/s00373-024-02864-8
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Leonhard Sidl, Maximilian Faissner, Manuel Uhlir, Cristian A. Velandia-Huerto, Maria Waldl, Huating Yao, Ivo L. Hofacker, Peter F Stadler
Computational complexity, algorithmic scope, and evolution
In Journal of Physics: Complexity, Institute of Physics, volume 6, 2025. Institute of Physics. 10.1088/2632-072X/adb928
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Rustam Tagiew, Ilkay Wunderlich, Mark Sastuba, Kilian Göller, Steffen Seitz
RailGoerl24: Görlitz Rail Test Center CV Dataset 2024
In Proceedings of the 1st IEEE International Conference on Engineering Reliable Autonomous Systems, ERAS 2025, IEEE, 2025. IEEE. 10.1109/ERAS63351.2025.11135724
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DEMYSTIFYING TOPOLOGICAL MESSAGE-PASSING WITH RELATIONAL STRUCTURES: A CASE STUDY ON OVERSQUASHING IN SIMPLICIAL MESSAGE-PASSING
In Proceedings of the 13th International Conference on Learning Representations, ICLR 2025, International Conference on Learning Representations, ICLR, 70745-70794, 2025. International Conference on Learning Representations, ICLR.
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RosettaAMRLD: A Reaction-Driven Approach for Structure-Based Drug Design from Combinatorial Libraries with Monte Carlo Metropolis Algorithms
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 5945-5959, 2025. American Chemical Society. 10.1021/acs.jcim.5c00497
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Johannes Tantow, Lukas Gerlach, Stephan Mennicke, Markus Krötzsch
Verifying Datalog Reasoning with Lean
In Proceedings of the 16th International Conference on Interactive Theorem Proving, ITP 2025, Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2025. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing. 10.4230/LIPIcs.ITP.2025.36
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RadioRAG: Online Retrieval–Augmented Generation for Radiology Question Answering
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Van Thinh To, Phuoc Chung van Nguyen, Gia Bao Truong, Tuyetminh Phan, Tieu-Long Phan, Rolf Fagerberg, Peter F Stadler, Tuyenngoc Truong
KGG: Knowledge-Guided Graph Self-Supervised Learning to Enhance Molecular Property Predictions
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 9443-9458, 2025. American Chemical Society. 10.1021/acs.jcim.5c01068
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Minh H. Tran, Cristina E. Martina, Rocco Moretti, Marcus B.M. Nagel, Kevin L. Schey, Jens Meiler
RosettaHDX: Predicting antibody-antigen interaction from hydrogen-deuterium exchange mass spectrometry data
In Journal of Structural Biology, Academic Press Inc., volume 217, 2025. Academic Press Inc.. 10.1016/j.jsb.2025.108166
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The Chuong Trinh, Tieu-Long Phan, Van Thinh To, Thanh An Pham, Gia Bao Truong, Lai Hoang Son Le, Xuan Truc Dinh Tran, Tuyenngoc Truong
Synergy of advanced machine learning and deep neural networks with consensus molecular docking for virtual screening of anaplastic lymphoma kinase inhibitors
In Journal of Computer-Aided Molecular Design, Springer, volume 39, 2025. Springer. 10.1007/s10822-025-00657-6
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Claiborne W. Tydings, Jens Meiler, Allison S. Walker
Computational structure prediction of lanthipeptides with NMR data reveals underappreciated peptide flexibility
In Protein Science, John Wiley and Sons Inc, volume 34, 2025. John Wiley and Sons Inc. 10.1002/pro.70252
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Gregory P. Veldhuizen, Tim Lenz, Didem Cifci, Marko van Treeck, Jan Clusmann, Yazhou Chen, Carolin Victoria Schneider, Tom Luedde, Peter Wilhelmus de Leeuw, Ali El-Armouche, Daniel Truhn, Jakob Nikolas Kather
Deep learning can predict cardiovascular events from liver imaging
In JHEP Reports, Elsevier B.V., volume 7, 2025. Elsevier B.V.. 10.1016/j.jhepr.2025.101427
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Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Stefanie Speidel
SurgicaL-CD: Generating Surgical Images via Unpaired Image Translation with Latent Consistency Diffusion Models
In Proceedings of the 18th European Conference on Computer Vision, ECCV 2024, Springer, 218-235, 2025. Springer. 10.1007/978-3-031-91907-7_13
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Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Fiona R. Kolbinger, Stefanie Speidel
Data Augmentation for Surgical Scene Segmentation with Anatomy-Aware Diffusion Models
In Proceedings of the 2025 IEEE/CVF Winter Conference on Applications of Computer Vision, WACV 2025, IEEE, 2280-2290, 2025. IEEE. 10.1109/WACV61041.2025.00228
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Lucas Maciel Vieira, Natasha Andressa Nogueira Jorge, João Batista De Sousa, João Carlos Setubal, Peter F Stadler, Maria Emília Machado Telles Walter
Machine learning-based survival prediction in colorectal cancer combining clinical and biological features
In Oncotarget, Impact Journals LLC, volume 16, 834-847, 2025. Impact Journals LLC. 10.18632/oncotarget.28783
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Christian Vielhaus, Mauri Seidel, Vincent Latzko, Alexander Grob, Peter Sossalla, Martin Reisslein, Frank H. P. Fitzek
vBerlinV2N: Recreating a Cellular Network Measurement Campaign With Simulations
In IEEE Access, IEEE, volume 13, 127023-127044, 2025. IEEE. 10.1109/ACCESS.2025.3588416
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Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus W. Voehler, Anja Penk, Jens Meiler, Clara Tabea Schoeder
Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan
In Journal of Structural Biology, Academic Press Inc., volume 217, 2025. Academic Press Inc.. 10.1016/j.jsb.2025.108180
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Kien Vu Trung, Marcus Hollenbach, Gregory P. Veldhuizen, Oliver Lester Saldanha, Jakob Garbe, Jonas Rosendahl, Sebastian Krug, Patrick Michl, Jürgen Feisthammel, Thomas F. Karlas, Jochen Hampe, Albrecht Hoffmeister, Jakob Nikolas Kather
Deep Learning-Based Detection of Malignant Bile Duct Stenosis in Fluoroscopy Images of Endoscopic Retrograde Cholangiopancreatography
In Digestion, S. Karger AG, volume 106, 287-302, 2025. S. Karger AG. 10.1159/000543049
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Cong Wang, Roberto Calandra, Verena Klös
Effective Explanations for Belief-Desire-Intention Robots: When and What to Explain
In Proceedings of the 34th IEEE International Conference on Robot and Human Interactive Communication, RO-MAN 2025, IEEE Computer Society, 410-415, 2025. IEEE Computer Society. 10.1109/RO-MAN63969.2025.11217662
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Kevin Wang, Johann Suess, Dominik Rivoir, Micha Pfeiffer, Sebastian Bodenstedt, Martin Wagner, Stefanie Speidel
Towards Video-Based Force Estimation within Tool-Bowel Interaction
In Proceedings of the Medical Imaging 2025: Image-Guided Procedures, Robotic Interventions, and Modeling, SPIE, 2025. SPIE. 10.1117/12.3045915
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Isabella Catharina Wiest, Fabian Wolf, Marie Elisabeth Lessmann, Marko van Treeck, Dyke Ferber, Jiefu Zhu, Heiko Boehme, Keno Kyrill Bressem, Hannes Ulrich, Matthias P. Ebert, Jakob Nikolas Kather
A software pipeline for medical information extraction with large language models, open source and suitable for oncology
In npj Precision Oncology, Nature Research, volume 9, 2025. Nature Research. 10.1038/s41698-025-01103-4
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Georg Wölflein, Dyke Ferber, Daniel Truhn, Ognjen Arandjelović, Jakob Nikolas Kather
LLM Agents Making Agent Tools
In Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics, ACL 2025, Association for Computational Linguistics (ACL), 26092-26130, 2025. Association for Computational Linguistics (ACL). 10.18653/v1/2025.acl-long.1266
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Laura Žigutytė, Thomas Sorz-Nechay, Jan Clusmann, Jakob Nikolas Kather
Erratum to ‘Use of artificial intelligence for liver diseases: A survey from the EASL congress 2024’ [JHEP Reports (2024) doi https://doi.org/10.1016/j.jhepr.2024.101209] (JHEP Reports (2024) 6(12), (S2589555924002131), (10.1016/j.jhepr.2024.101209))
In JHEP Reports, Elsevier B.V., volume 7, 2025. Elsevier B.V.. 10.1016/j.jhepr.2025.101446
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Sandra Zimmermann, Paul Schwenteck, Christian Vielhaus, Juan A. Cabrera, Frank H. P. Fitzek
COSMIC - Coding for Optimized Sending in Multimedia InterPlanetary Communication
In Proceedings of the 39th International Conference on Information Networking, ICOIN 2025, IEEE Computer Society, 390-395, 2025. IEEE Computer Society. 10.1109/ICOIN63865.2025.10993152
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Alexander S. Zlobin, Valentina D. Maslova, Julia Belyaeva, Jens Meiler, Andrey V. Golovin
Long-Range Electrostatics in Serine Proteases: Machine Learning-Driven Reaction Sampling Yields Insights for Enzyme Design
In Journal of Chemical Information and Modeling, American Chemical Society, volume 65, 2003-2013, 2025. American Chemical Society. 10.1021/acs.jcim.4c01827
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Rajab Aghamov, Christel Baier, Toghrul Karimov, Joel Ouaknine, Jakob Piribauer
Linear dynamical systems with continuous weight functions
In Proceedings of the 27th ACM International Conference on Hybrid Systems: Computation and Control, HSCC 2024, ACM, 2024. ACM. 10.1145/3641513.3650173
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Veeti Ahvonen, Damian Heiman, Antti Kuusisto, Carsten Lutz
Logical Characterizations of Recurrent Graph Neural Networks with Reals and Floats
In Proceedings of the 38th Conference on Neural Information Processing Systems, NeurIPS 2024, Neural information processing systems foundation, 2024. Neural information processing systems foundation.
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Kossi Amouzouvi, Bowen Song, Sahar Vahdati, Jens Lehmann
Knowledge GeoGebra: Leveraging Geometry of Relation Embeddings in Knowledge Graph Completion
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 9832-9842, 2024. European Language Resources Association (ELRA).
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Kossi Amouzouvi, Sahar Vahdati, Bowen Song, Bernard Oduoku Bainson, Nur A. Zarin Nishat, Jens Lehmann
A Study of LFT Embeddings in the Second Order Clifford Algebra Cl(R2)
In IEEE Access, IEEE, volume 12, 187741-187755, 2024. IEEE. 10.1109/ACCESS.2024.3514303
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Volodymyr Bondarenko, Jonas Schulz, Giang T. Nguyen, Frank H. P. Fitzek
Latency Visualization Emulation Scheme for Interactive Cloud XR Gaming
In Proceedings of the 22nd IEEE International Conference on Pervasive Computing and Communications Workshops and other Affiliated Events, PerCom Workshops 2024, IEEE, 385-387, 2024. IEEE. 10.1109/PerComWorkshops59983.2024.10503547
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Benjamin P. Brown, Richard A. Stein, Jens Meiler, Hassane S. McHaourab
Approximating Projections of Conformational Boltzmann Distributions with AlphaFold2 Predictions: Opportunities and Limitations
In Journal of Chemical Theory and Computation, American Chemical Society, volume 20, 1434-1447, 2024. American Chemical Society. 10.1021/acs.jctc.3c01081
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Grover Enrique Castro Guzman, Peter F Stadler, Andre Fujita
Cavity approach for the approximation of spectral density of graphs with heterogeneous structures
In Physical Review E, American Physical Society, volume 109, 2024. American Physical Society. 10.1103/PhysRevE.109.034303
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Elias Crum, Antonio De Santis, Manon Ovide, Jiaxin Pan, Alessia Pisu, Nicolas Lazzari, Sebastian Rudolph
Enriching Ontologies with Disjointness Axioms using Large Language Models
In Proceedings of the Joint of the 2nd Workshop on Knowledge Base Construction from Pre-Trained Language Models and the 3rd Challenge on Language Models for Knowledge Base Construction, KBC-LM-LM-KBC 2024, CEUR-WS, 2024. CEUR-WS.
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Zdravko Dugonjić, Adrien Pupier, Benjamin Lecouteux, Maximin Coavoux
What has LeBenchmark Learnt about French Syntax?
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 17493-17499, 2024. European Language Resources Association (ELRA).
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Regression-based Deep-Learning predicts molecular biomarkers from pathology slides
In Nature Communications, Nature Research, volume 15, 2024. Nature Research. 10.1038/s41467-024-45589-1
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Dyke Ferber, Georg Wölflein, Isabella Catharina Wiest, Marta Ligero, Srividhya Sainath, Narmin Ghaffari Laleh, Omar S.M. El Nahhas, Gustav Anton Muller-Franzes, Dirk Jäger, Daniel Truhn, Jakob Nikolas Kather
In-context learning enables multimodal large language models to classify cancer pathology images
In Nature Communications, Nature Research, volume 15, 2024. Nature Research. 10.1038/s41467-024-51465-9
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Niklas Funk, Erik Helmut, Georgia G. Chalvatzaki, Roberto Calandra, Jan Peters
Evetac: An Event-Based Optical Tactile Sensor for Robotic Manipulation
In IEEE Transactions on Robotics, IEEE, volume 40, 3812-3832, 2024. IEEE. 10.1109/TRO.2024.3428430
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Bernhard Ganter, Tom Hanika, Johannes Hirth, S. Obiedkov
Collaborative Hybrid Human AI Learning through Conceptual Exploration
In Proceedings of the 3rd International Conference on Hybrid Human-Artificial Intelligence, HHAI-WS 2024, CEUR-WS, 1-8, 2024. CEUR-WS.
Composite AI Conference Publication
Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency (Extended Abstract)
In Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning, NMR 2024, CEUR-WS, 183-186, 2024. CEUR-WS.
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Lukas Gerlach, David Carral, Markus Hecher
Finite Groundings for ASP with Functions: A Journey through Consistency
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3386-3394, 2024. International Joint Conferences on Artificial Intelligence.
Composite AI Conference Publication
Marcos E. González Laffitte, Peter F Stadler
Progressive Multiple Alignment of Graphs
In Algorithms, Multidisciplinary Digital Publishing Institute (MDPI), volume 17, 2024. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/a17030116
AI Methods for Health Journal Publication
Marco Gustav, Nic Gabriel Reitsam, Zunamys I. Carrero, Chiara Maria Lavinia Loeffler, Marko van Treeck, Tanwei Yuan, Nicholas Paul West, Philip Quirke, Titus Josef Brinker, Hermann Brenner, Löetitia Favre, Bruno Märkl, Albrecht Stenzinger, Alexander Brobeil, Michael Hoffmeister, Julien Calderaro, Anaïs Pujals, Jakob Nikolas Kather
Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology
In npj Precision Oncology, Nature Research, volume 8, 2024. Nature Research. 10.1038/s41698-024-00592-z
Intelligent Medical Devices Journal Publication
Tianyu Han, Laura Žigutytė, Luisa Charlotte Huck, Marc Sebastian Huppertz, Robert Malte Siepmann, Yossi Gandelsman, Christian Blüthgen, Firas Khader, Christiane K. Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Reconstruction of patient-specific confounders in AI-based radiologic image interpretation using generative pretraining
In Cell Reports Medicine, Cell Press, volume 5, 2024. Cell Press. 10.1016/j.xcrm.2024.101713
Intelligent Medical Devices Journal Publication
Tianyu Han, Sven Nebelung, Firas Khader, Tianci Wang, Gustav Anton Muller-Franzes, Christiane K. Kuhl, Sebastian Foersch, Jens Kleesiek, Christoph Haarburger, Keno Kyrill Bressem, Jakob Nikolas Kather, Daniel Truhn
Medical large language models are susceptible to targeted misinformation attacks
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01282-7
Intelligent Medical Devices Journal Publication
Philipp Hanisch, Markus Krötzsch
Chase Termination Beyond Polynomial Time
In Proc. ACM Manag. Data, ACM, volume 2(2), 2024. ACM. 10.1145/3651594
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Katherine Jane Hewitt, Isabella Catharina Wiest, Zunamys I. Carrero, Laura Bejan, Thomas O. Millner, Sebastian G.P. Brandner, Jakob Nikolas Kather
Large language models as a diagnostic support tool in neuropathology
In Journal of Pathology: Clinical Research, John Wiley and Sons Inc, volume 10, 2024. John Wiley and Sons Inc. 10.1002/2056-4538.70009
Intelligent Medical Devices Journal Publication
Lars Hilgers, Narmin Ghaffari Laleh, Nicholas Paul West, Alice C. Westwood, Katherine Jane Hewitt, Philip Quirke, Heike Irmgard Grabsch, Zunamys I. Carrero, Emylou Matthaei, Chiara Maria Lavinia Loeffler, Titus Josef Brinker, Tanwei Yuan, Hermann Brenner, Alexander Brobeil, Michael Hoffmeister, Jakob Nikolas Kather
Automated curation of large-scale cancer histopathology image datasets using deep learning
In Histopathology, John Wiley and Sons Inc, volume 84, 1139-1153, 2024. John Wiley and Sons Inc. 10.1111/his.15159
Intelligent Medical Devices Journal Publication
Hanna Hoffmann, Isabel Funke, Philipp Peters, Danush Kumar Venkatesh, Jan Egger, Dominik Rivoir, Rainer Röhrig, Frank W. Hölzle, Sebastian Bodenstedt, Marie Christin Willemer, Stefanie Speidel, B. Hinrichs-Puladi
AIxSuture: vision-based assessment of open suturing skills
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 1045-1052, 2024. Springer. 10.1007/s11548-024-03093-3
Intelligent Medical Devices Journal Publication
Hernán Inojosa, Isabel Voigt, Judith Wenk, Dyke Ferber, Isabella Catharina Wiest, Dario Antweiler, Eva Weicken, Stephen Henry Gilbert, Jakob Nikolas Kather, Katja Akgün, Tjalf Ziemssen
Integrating large language models in care, research, and education in multiple sclerosis management
In Multiple Sclerosis Journal, SAGE Publications Ltd, volume 30, 1392-1401, 2024. SAGE Publications Ltd. 10.1177/13524585241277376
Intelligent Medical Devices Journal Publication
Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: Your Friendly and Versatile Rule Reasoning Toolkit
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 743-754, 2024. AAAI.
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Alex Ivliev, Lukas Gerlach, Simon Meusel, Jakob Steinberg, Markus Krötzsch
Nemo: A Scalable and Versatile Datalog Engine
In Proceedings of the 5th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2024, CEUR-WS, 43-47, 2024. CEUR-WS.
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Charvi Jain, Sahar Vahdati, Nandu Gopan, Ivo F. Sbalzarini, Jens Lehmann
Evaluating Large Language Model Literature Reviews in Interdisciplinary Science: A Systems Biology Perspective
In Proceedings of the Joint of Posters, Demos, Workshops, and Tutorials of the 24th International Conference on Knowledge Engineering and Knowledge Management, EKAW-PDWT 2024, CEUR-WS, 2024. CEUR-WS.
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Xiaofeng Jiang, Michael Hoffmeister, Hermann Brenner, Hannah Sophie Muti, Tanwei Yuan, Sebastian Foersch, Nicholas Paul West, Alexander Brobeil, Jitendra JONNAGADDALA, Nicholas John Hawkins, Robyn Lynne Ward, Titus Josef Brinker, Oliver Lester Saldanha, Jia Ke, Wolfram Mueller, Heike Irmgard Grabsch, Philip Quirke, Daniel Truhn, Jakob Nikolas Kather
End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study
In The Lancet Digital Health, Elsevier Ltd, volume 6, e33-e43, 2024. Elsevier Ltd. 10.1016/S2589-7500(23)00208-X
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Caleb A.H. Jones, Benjamin P. Brown, Daniel C. Schultz, Julie L. Engers, Valerie M. Kramlinger, Jens Meiler, Craig W. Lindsley
Computer-Aided Design and Biological Evaluation of Diazaspirocyclic D4R Antagonists
In ACS Chemical Neuroscience, American Chemical Society, volume 15, 2396-2407, 2024. American Chemical Society. 10.1021/acschemneuro.4c00086
AI Methods for Health Journal Publication
Jonas Karge, Sebastian Rudolph, Juliette Michelle Burkhardt, Dominik Rusovac
To Lead or to be Led: A Generalized Condorcet Jury Theorem under Dependence
In Proceedings of the 23rd International Conference on Autonomous Agents and Multiagent Systems, AAMAS 2024, International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS), 983-991, 2024. International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS).
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Jakob Nikolas Kather, Dyke Ferber, Isabella Catharina Wiest, Stephen Henry Gilbert, Daniel Truhn
Large language models could make natural language again the universal interface of healthcare
In Nature Medicine, Nature Research, volume 30, 2708-2710, 2024. Nature Research. 10.1038/s41591-024-03199-w
Intelligent Medical Devices Journal Publication
Kathlén Kohn, Guido Montúfar, Vahid Shahverdi, Matthew Trager
Function Space and Critical Points of Linear Convolutional Networks
In SIAM Journal on Applied Algebra and Geometry, Society for Industrial and Applied Mathematics Publications, volume 8, 333-362, 2024. Society for Industrial and Applied Mathematics Publications. 10.1137/23M1565504
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Fiona R. Kolbinger, Gregory P. Veldhuizen, Jiefu Zhu, Daniel Truhn, Jakob Nikolas Kather
Reporting guidelines in medical artificial intelligence: a systematic review and meta-analysis
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00492-0
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D. Kosakin, S. Obiedkov, Ekaterina V. Rakhilina, I. Smirnov, Anastasia S. Vyrenkova, Ekaterina A. Zalivina
Russian Learner Corpus: Towards Error-Cause Annotation for L2 Russian
In Proceedings of the Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024, European Language Resources Association (ELRA), 14240-14258, 2024. European Language Resources Association (ELRA).
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Charlotte Langer
Decision-making power and responsibility in an automated administration
In Discover Artificial Intelligence, Springer Nature, volume 4, 2024. Springer Nature. 10.1007/s44163-024-00152-1
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Jens Lehmann, Dhananjay Bhandiwad, Preetam Gattogi, Sahar Vahdati
Beyond Boundaries: A Human-like Approach for Question Answering over Structured and Unstructured Information Sources
In Transactions of the Association for Computational Linguistics, MIT Press Journals, volume 12, 786-802, 2024. MIT Press Journals. 10.1162/tacl_a_00671
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Fabian Liessmann, Lukas von Bredow, Jens Meiler, Ines Liebscher
Targeting adhesion G protein-coupled receptors. Current status and future perspectives
In Structure, Cell Press, volume 32, 2188-2205, 2024. Cell Press. 10.1016/j.str.2024.10.022
AI Methods for Health Journal Publication
Yunchao Lance Liu, Ha Dong, Xin Wang, Rocco Moretti, Yu Wang, Zhaoqian Su, Jiawei Gu, Bobby E. Bodenheimer, Charles David Weaver, Jens Meiler, Tyler Derr
WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking
In Proceedings of the 38th Conference on Neural Information Processing Systems, NeurIPS 2024, Neural information processing systems foundation, 2024. Neural information processing systems foundation.
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Chiara Maria Lavinia Loeffler, Omar S.M. El Nahhas, Hannah Sophie Muti, Zunamys I. Carrero, Tobias Seibel, Marko van Treeck, Didem Cifci, Marco Gustav, Kevin Bretz, Nadine Therese Gaisa, Kjong Van Lehmann, Alexandra F. Léary, Pier Selenica, Jorge Sérgio Reis-Filho, Nadina Ortiz-Bruechle, Jakob Nikolas Kather
Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types
In BMC Biology, BioMed Central Ltd, volume 22, 2024. BioMed Central Ltd. 10.1186/s12915-024-02022-9
Intelligent Medical Devices Journal Publication
Carsten Lutz, Quentin Maniere
Adding Circumscription to Decidable Fragments of First-Order Logic: A Complexity Rollercoaster
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 531-541, 2024. AAAI.
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Carsten Lutz, Lukas Schulze
Description Logics with Abstraction and Refinement: From ALC to EL
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 542-552, 2024. AAAI.
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Tim S. Lyon, Jonas Karge
Constructive Interpolation and Concept-Based Beth Definability for Description Logics via Sequents
In Proceedings of the 33rd International Joint Conference on Artificial Intelligence, IJCAI 2024, International Joint Conferences on Artificial Intelligence, 3484-3492, 2024. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2024/386
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Lucas Fabian Naumann, Jannik Irmai, Shengxian Zhao, Bjoern Andres
Box Facets and Cut Facets of Lifted Multicut Polytopes
In Proceedings of the 41st International Conference on Machine Learning, ICML 2024, ML Research Press, 37365-37375, 2024. ML Research Press.
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Anna Niarakis, Reinhard C. Laubenbacher, Gary C. An, Yaron Ilan, Jasmin Fisher, Åsmund Flobak, Kristin Reiche, María Rodríguez Martínez, Liesbet Geris, Luiz Carlos Maia Ladeira, Lorenzo Veschini, Michael L. Blinov, Francesco Messina, Luis L. Fonseca, Sandra Saraiva Ferreira, Arnau Montagud, Vincent Noel, Malvina Marku, Eirini Tsirvouli, Marcella M. Torres, Leonard A. Harris, T. J. Sego, Chase Cockrell, Amanda E. Shick, Hasan Balci, Albin Salazar, Kinza Rian, Ahmed Abdelmonem Hemedan, Marina Esteban-Medina, Bernard Staumont, Esteban A. Hernandez–Vargas, Shiny Martis B, Alejandro Madrid-Valiente, Panagiotis Karampelesis, Luis Sordo Vieira, Pradyumna Vinod Harlapur, Alexander Jan Kulesza, Niloofar Nikaein, Winston Garira, Rahuman S. Malik-Sheriff, Juilee D. Thakar, Van Du T. Tran, José Carbonell-Caballero, Soroush Safaei, Alfonso Valencia, Andrei Yu Zinovyev, James Alexander Glazier
Immune digital twins for complex human pathologies: applications, limitations, and challenges
In npj Systems Biology and Applications, Nature Research, volume 10, 2024. Nature Research. 10.1038/s41540-024-00450-5
AI Methods for Health Journal Publication
Jan Moritz Niehues, Gustav Anton Muller-Franzes, Yoni Schirris, Sophia J. Wagner, Michael Adrian Jendrusch, Matthias Kloor, Alexander T. Pearson, Hannah Sophie Muti, Katherine Jane Hewitt, Gregory P. Veldhuizen, Laura Žigutytė, Daniel Truhn, Jakob Nikolas Kather
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance
In Computers in Biology and Medicine, Elsevier Ltd, volume 175, 2024. Elsevier Ltd. 10.1016/j.compbiomed.2024.108410
Intelligent Medical Devices Journal Publication
S. Obiedkov, Barış Sertkaya
Probably Approximately Correct Ontology Completion with pacco (Extended Abstract)
In Proceedings of the 37th International Workshop on Description Logics, DL 2024, CEUR-WS, 2024. CEUR-WS.
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Iuliia Ozerova, Jörg Fallmann, Mario Mörl, Matthias Bernt, Sonja J. Prohaska, Peter F Stadler
Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution
In Genome Biology and Evolution, Oxford University Press, volume 16, 2024. Oxford University Press. 10.1093/gbe/evae232
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Raquel Perez-Lopez, Narmin Ghaffari Laleh, Faisal Mahmood, Jakob Nikolas Kather
A guide to artificial intelligence for cancer researchers
In Nature Reviews Cancer, Nature Research, volume 24, 427-441, 2024. Nature Research. 10.1038/s41568-024-00694-7
Intelligent Medical Devices Journal Publication
Antonia Sophia Peter, Dieter S. Hoffmann, Johannes Klier, Christina M. Lange, Johanna Moeller, Victoria Rose Most, Christina K. Wüst, Max Beining, Sevilay Gülesen, Hannes Junker, Birke Brumme, Torben Schiffner, Jens Meiler, Clara Tabea Schoeder
Strategies of rational and structure-driven vaccine design for Arenaviruses
In Infection, Genetics and Evolution, Elsevier B.V., volume 123, 2024. Elsevier B.V.. 10.1016/j.meegid.2024.105626
AI Methods for Health Journal Publication
Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob Lykke Andersen, Rolf Fagerberg, Peter F Stadler
Reaction rebalancing: a novel approach to curating reaction databases
In Journal of Cheminformatics, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13321-024-00875-4
AI Methods for Health Journal Publication
Michelle Philipp, Christopher W. Moth, Nikola Ristic, Johanna Katarina Sofie Tiemann, Florian Seufert, Aleksandra Panfilova, Jens Meiler, Peter Werner Hildebrand, Amelie Stein, Daniel Wiegreffe, René Staritzbichler
MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts
In Nucleic Acids Research, Oxford University Press, volume 52, W132-W139, 2024. Oxford University Press. 10.1093/nar/gkae301
AI Methods for Health Journal Publication
Nic Gabriel Reitsam, Bianca Grosser, David F. Steiner, Veselin Grozdanov, Ellery A. Wulczyn, Vincenzo L’Imperio, Markus Plass, Heimo Müller, Kurt Zatloukal, Hannah Sophie Muti, Jakob Nikolas Kather, Bruno Märkl
Converging deep learning and human-observed tumor-adipocyte interaction as a biomarker in colorectal cancer
In Communications Medicine, Springer Nature, volume 4, 2024. Springer Nature. 10.1038/s43856-024-00589-6
Intelligent Medical Devices Journal Publication
Nic Gabriel Reitsam, Johanna Sophie Enke, Kien Vu Trung, Bruno Märkl, Jakob Nikolas Kather
Artificial Intelligence in Colorectal Cancer: From Patient Screening over Tailoring Treatment Decisions to Identification of Novel Biomarkers
In Digestion, S. Karger AG, volume 105, 331-344, 2024. S. Karger AG. 10.1159/000539678
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Nic Gabriel Reitsam, Veselin Grozdanov, Chiara Maria Lavinia Löffler, Hannah Sophie Muti, Bianca Grosser, Jakob Nikolas Kather, Bruno Märkl
Novel biomarker SARIFA in colorectal cancer: highly prognostic, not genetically driven and histologic indicator of a distinct tumor biology
In Cancer Gene Therapy, Springer Nature, volume 31, 207-216, 2024. Springer Nature. 10.1038/s41417-023-00695-y
Intelligent Medical Devices Journal Publication
Dominik Rusovac, Markus Hecher, Martin Gebser, Sarah Alice Gaggl, Johannes Klaus Fichte
Navigating and Querying Answer Sets: How Hard Is It Really and Why?
In Proceedings of the 21st International Conference on Principles of Knowledge Representation and Reasoning, KR 2024, AAAI, 642-653, 2024. AAAI.
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Farid Saberi-Movahed, Bitasta Biswas, Prayag Tiwari, Jens Lehmann, Sahar Vahdati
Deep Nonnegative Matrix Factorization with Joint Global and Local Structure Preservation
In Expert Systems with Applications, Elsevier Ltd, volume 249, 2024. Elsevier Ltd. 10.1016/j.eswa.2024.123645
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Anahy Santiago Arguello, Guillaume E. Scholz, Peter F Stadler
Core Potentials: The Consensus Segmentation Conjecture
In Mathematics in Computer Science, Birkhauser, volume 18, 2024. Birkhauser. 10.1007/s11786-024-00593-y
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Stephanie Schiedermair
The Civil Service and Artificial Intelligence
In The Handbook of Civil Service in Europe, Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.), 2024. Karl-Peter Sommermann/Adam Krzywoń/Cristina Fraenkel-Haeberle (eds.).
Societal Framework for AI Journal Publication
Stephanie Schiedermair
Between Efficiency and Loss of Control: The Use of Artificial Intelligence by the Public Administration in the Mirror of the Law
In Quo vadis Artificial Intelligence in Nuclear Waste Management?, Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.), 16-18, 2024. Bundesamt für die Sicherheit der nuklearen Entsorgung (BASE) (Hrsg.).
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Richard Schroedter, Adnan Haidar, Ronald Tetzlaff
Fault Impact Map for Memristive Crossbar Neural Networks
In Proceedings of the 13th International Conference on Modern Circuits and Systems Technologies, MOCAST 2024, IEEE, 2024. IEEE. 10.1109/MOCAST61810.2024.10615515
AI Compute Paradigms Conference Publication
Jonas Schulz, Clemens Dubslaff, Patrick Seeling, S. C. Li, Stefanie Speidel, Frank H. P. Fitzek
Negative Latency in the Tactile Internet as Enabler for Global Metaverse Immersion
In IEEE Network, IEEE, volume 38, 167-173, 2024. IEEE. 10.1109/MNET.2024.3375522
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Jonas Schulz, Susu Hu, Stefanie Speidel, Patrick Seeling, Frank H. P. Fitzek
Negative Latency in Computer Vision: A Key to Efficient Edge Offloading
In Proceedings of the 2024 IEEE Global Communications Conference, GLOBECOM 2024, IEEE, 3110-3115, 2024. IEEE. 10.1109/GLOBECOM52923.2024.10901398
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Sudharshan Suresh, Haozhi Qi, Tingfan Wu, Taosha Fan, Luis Pineda, Mike Lambeta, Jitendra Malik, Mrinal Kalakrishnan, Roberto Calandra, Michael Kaess, Joseph Ortiz, Mustafa Mukadam
NeuralFeels with neural fields: Visuotactile perception for in-hand manipulation
In Science Robotics, American Association for the Advancement of Science, volume 9, 2024. American Association for the Advancement of Science. 10.1126/scirobotics.adl0628
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Yidan Tang, Rocco Moretti, Jens Meiler
Recent Advances in Automated Structure-Based De Novo Drug Design
In Journal of Chemical Information and Modeling, American Chemical Society, volume 64, 1794-1805, 2024. American Chemical Society. 10.1021/acs.jcim.4c00247
AI Methods for Health Journal Publication
Daniel Truhn, Chiara Maria Lavinia Loeffler, Gustav Anton Muller-Franzes, Sven Nebelung, Katherine Jane Hewitt, Sebastian G.P. Brandner, Keno Kyrill Bressem, Sebastian Foersch, Jakob Nikolas Kather
Extracting structured information from unstructured histopathology reports using generative pre-trained transformer 4 (GPT-4)
In Journal of Pathology, John Wiley and Sons Ltd, volume 262, 310-319, 2024. John Wiley and Sons Ltd. 10.1002/path.6232
Intelligent Medical Devices Journal Publication
Gia Bao Truong, Thanh An Pham, Van Thinh To, Hoang Son Lai Le, Phuoc Chung van Nguyen, The Chuong Trinh, Tieu-Long Phan, Tuyen Ngoc Truong
Discovery of Vascular Endothelial Growth Factor Receptor 2 Inhibitors Employing Junction Tree Variational Autoencoder with Bayesian Optimization and Gradient Ascent
In ACS Omega, American Chemical Society, volume 9, 47180-47193, 2024. American Chemical Society. 10.1021/acsomega.4c07689
AI Methods for Health Journal Publication
Michaela Unger, Jakob Nikolas Kather
Deep learning in cancer genomics and histopathology
In Genome Medicine, BioMed Central Ltd, volume 16, 2024. BioMed Central Ltd. 10.1186/s13073-024-01315-6
Intelligent Medical Devices Journal Publication
Michaela Unger, Jakob Nikolas Kather
A systematic analysis of deep learning in genomics and histopathology for precision oncology
In BMC Medical Genomics, BioMed Central Ltd, volume 17, 2024. BioMed Central Ltd. 10.1186/s12920-024-01796-9
Intelligent Medical Devices Journal Publication
Brinda Kizhakke Vallat, Benjamin M. Webb, John D. Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei, Ezra Peisach, Arthur O. Zalevsky, Jared M. Sagendorf, Hongsuda Tangmunarunkit, Serban Voinea, Monica R. Sekharan, Jian Yu, Alexandre M. J. J. Bonvin, Frank P. DiMaio, Gerhard Hummer, Jens Meiler, Emad Tajkhorshid, Thomas E. Ferrin, Catherine L. Lawson, Alexander Leitner, Juri Rappsilber, Claus A.M. Seidel, Cy M.J. Jeffries, Stephen K. Burley, Jeffrey C. Hoch, Kurisu Genji, Kyle L. Morris, Ardan Patwardhan, Sameer S. Velankar, Torsten F. Schwede, Jill Trewhella, Carl F. Kesselman, Helen M. Berman, Jan Jurica
IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods
In Journal of Molecular Biology, Academic Press, volume 436, 2024. Academic Press. 10.1016/j.jmb.2024.168546
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Danush Kumar Venkatesh, Dominik Rivoir, Micha Pfeiffer, Fiona R. Kolbinger, Marius Distler, Jürgen Weitz, Stefanie Speidel
Exploring semantic consistency in unpaired image translation to generate data for surgical applications
In International Journal of Computer Assisted Radiology and Surgery, Springer, volume 19, 985-993, 2024. Springer. 10.1007/s11548-024-03079-1
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Sarah von Löhneysen, Mario Mörl, Peter F Stadler
Limits of experimental evidence in RNA secondary structure prediction
In Frontiers in Bioinformatics, Frontiers Media SA, volume 4, 2024. Frontiers Media SA. 10.3389/fbinf.2024.1346779
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Ran Wei, Nathan O. Lambert, Anthony D. McDonald, Alfredo A. García, Roberto Calandra
A Unified View on Solving Objective Mismatch in Model-Based Reinforcement Learning
In Transactions on Machine Learning Research, Transactions on Machine Learning Research, volume 2024, 2024. Transactions on Machine Learning Research.
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Isabella Catharina Wiest, Falk Gerrik Verhees, Dyke Ferber, Jiefu Zhu, Michael Bauer, Ute Lewitzka, Andrea Pfennig, Pavol Mikoláš, Jakob Nikolas Kather
Detection of suicidality from medical text using privacy-preserving large language models
In British Journal of Psychiatry, Cambridge University Press, volume 225, 532-537, 2024. Cambridge University Press. 10.1192/bjp.2024.134
Intelligent Medical Devices Journal Publication
Isabella Catharina Wiest, Dyke Ferber, Jiefu Zhu, Marko van Treeck, Sonja K. Meyer, Radhika Juglan, Zunamys I. Carrero, Daniel Paech, Jens Kleesiek, Matthias P. Ebert, Daniel Truhn, Jakob Nikolas Kather
Privacy-preserving large language models for structured medical information retrieval
In npj Digital Medicine, Nature Research, volume 7, 2024. Nature Research. 10.1038/s41746-024-01233-2
Intelligent Medical Devices Journal Publication
Jiajing Zhang, Lyuqiao Zhong, Yushan Yang, Jonas Schulz, Giang T. Nguyen, Frank H. P. Fitzek
LEON: Simulating Handover Integrating Non-Terrestrial Networks with 5G and beyond
In Proceedings of the 10th Workshop on Micro Aerial Vehicle Networks, Systems, and Applications, DroNet 2024, ACM, 43-48, 2024. ACM. 10.1145/3661810.3663470
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Laura Žigutytė, Thomas Sorz-Nechay, Jan Clusmann, Jakob Nikolas Kather
Use of artificial intelligence for liver diseases: A survey from the EASL congress 2024
In JHEP Reports, Elsevier B.V., volume 6, 2024. Elsevier B.V.. 10.1016/j.jhepr.2024.101209
Intelligent Medical Devices Journal Publication
Dörthe Arndt, Stephan Mennicke
Notation3 as an Existential Rule Language
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 70-85, 2023. Springer. 10.1007/978-3-031-45072-3_5
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Martin Bogdan
Is Boredom an Indicator on the way to Singularity of Artificial Intelligence? Hypotheses as Thought-Provoking Impulse
In Proceedings of the ESANN 2023, European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning, 2023. Computational Intelligence and Machine Learning. 10.14428/esann/2023.ES2023-89
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Pierre Bréchet, Katerina Papagiannouli, Jing An, Guido Montúfar
Critical Points and Convergence Analysis of Generative Deep Linear Networks Trained with Bures-Wasserstein Loss
In Proceedings of the 40th International Conference on Machine Learning, ICML 2023, ML Research Press, 3106-3147, 2023. ML Research Press.
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Julien Calderaro, Narmin Ghaffari Laleh, Qinghe Zeng, Pascale Maillé, Löetitia Favre, Anaïs Pujals, Christophe Klein, Céline Bazille, Lara Rosaline Heij, Arnaud Uguen, Tom Luedde, Luca M. Di Tommaso, Aurélie Beaufrère, Augustin Chatain, Delphine Gastineau, Công Trung Nguyen, Nguyen Canh Hiep, Khuyen Nguyen Thi, Viviane Gnemmi, Rondell P. Graham, Frédéric Charlotte, Dominique Wendum, Mukul Vij, Daniela S. Allende, Federico Natalio Aucejo, Alba Díaz, Benjamin Rivière, Astrid Herrero, Katja Evert, Diego Francesco Calvisi, Jérémy Gbenakpon Augustin, Wei Qiang Leow, Howard Ho Wai Leung, Emmanuel B. Boleslawski, Mohamed S. Rela, Arnaud François, Anthony Wing Hung Cha, Alejandro Forner, Marìa Elisa Reig, Manon Allaire, Olivier Scatton, Denis Châtelain, Camille Boulagnon-Rombi, Nathalie Stürm, Benjamin Menahem, E. Frouin, David Tougeron, Christophe Tournigand, Emmanuelle Kempf, Haeryoung Kim, Massih Ningarhari, Sophie Michalak-Provost, Purva Gopal, Raffaele Brustia, Éric Vi̇Bert, Kornelius Schulze, Darius Ferenc Ruether, Sören Alexander Weidemann, Rami Rhaiem, Jean Michel Pawlotsky, Xuchen Zhang, Alain Luciani, Sébastien Mulé, Alexis Laurent, Giuliana Amaddeo, Helene Regnault, Eleonora De Martin, Christine L. Sempoux, Pooja Navale, Maria A. Westerhoff, Regina Cheuk Lam Lo, Jan Bednarsch, Annette S.H. Gouw, Catherine Guettier, Marie Lequoy, Kenichi Harada, Pimsiri Sripongpun, Poowadon Wetwittayaklang, Nicolas Loménie, Jarukit Tantipisit, Apichat Kaewdech, Jeanne Shen, Valérie Paradis, Stefano Caruso, Jakob Nikolas Kather
Deep learning-based phenotyping reclassifies combined hepatocellular-cholangiocarcinoma
In Nature Communications, Nature Research, volume 14, 2023. Nature Research. 10.1038/s41467-023-43749-3
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Jan Clusmann, Fiona R. Kolbinger, Hannah Sophie Muti, Zunamys I. Carrero, Jan Niklas Eckardt, Narmin Ghaffari Laleh, Chiara Maria Lavinia Löffler, Sophie Caroline Schwarzkopf, Michaela Unger, Gregory P. Veldhuizen, Sophia J. Wagner, Jakob Nikolas Kather
The future landscape of large language models in medicine
In Communications Medicine, Springer Nature, volume 3, 2023. Springer Nature. 10.1038/s43856-023-00370-1
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Edgar Manfred Gustav Dorausch, Daniel Swist, Moritz Herzog, Christoph Statz, Julian Kober, Cornelius Kühnöl, Tönnis Trittler, Nora Martens, Franz Brinkmann, Jochen Hampe, Gerhard P. Fettweis
Adoption and evaluation of a multistatic Fourier-based synthetic aperture radar method for ultrasound imaging
In Proceedings of the Medical Imaging 2023: Ultrasonic Imaging and Tomography, SPIE, 2023. SPIE. 10.1117/12.2653898
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Stefan Ellmauthaler, Lukas Gerlach
ADF-BDD.DEV: Insights to undecided Statements in Abstract Dialectical Frameworks
In Proceedings of the 7th Workshop on Advances in Argumentation in Artificial Intelligence, AI^3 2023, CEUR-WS, 2023. CEUR-WS.
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Maurice Funk, Simon Hosemann, Jean Christoph Jung, Carsten Lutz
Towards Ontology Construction with Language Models
In Proceedings of the 1st Workshop on Knowledge Base Construction from Pre-Trained Language Models and the 2nd Challenge on Language Models for Knowledge Base Construction, KBC-LM + LM-KBC 2023, CEUR-WS, 2023. CEUR-WS.
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Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
In Proceedings of the 36th International Workshop on Description Logics, DL 2023, CEUR-WS, 2023. CEUR-WS.
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Lukas Gerlach, David Carral
Do Repeat Yourself: Understanding Sufficient Conditions for Restricted Chase Non-Termination
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 301-310, 2023. AAAI. 10.24963/kr.2023/30
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Lukas Gerlach, David Carral
General Acyclicity and Cyclicity Notions for the Disjunctive Skolem Chase
In Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023, AAAI Press, 6372-6379, 2023. AAAI Press. 10.1609/aaai.v37i5.25784
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Larry González, Alex Ivliev, Markus Krötzsch, Stephan Mennicke
Efficient Dependency Analysis for Existential Rules
In Proceedings of the 15th Alberto Mendelzon International Workshop on Foundations of Data Management, AMW 2023, CEUR-WS, 2023. CEUR-WS.
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Katherine Jane Hewitt, Chiara Maria Lavinia Löffler, Hannah Sophie Muti, Anna Sophie Berghoff, Christian Eisenlöffel, Marko van Treeck, Zunamys I. Carrero, Omar S.M. El Nahhas, Gregory P. Veldhuizen, Sophie Weil, Oliver Lester Saldanha, Laura Bejan, Thomas O. Millner, Sebastian G.P. Brandner, Sascha Brückmann, Jakob Nikolas Kather
Direct image to subtype prediction for brain tumors using deep learning
In Neuro-Oncology Advances, Oxford University Press, volume 5, 2023. Oxford University Press. 10.1093/noajnl/vdad139
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Alex Ivliev, Stefan Ellmauthaler, Lukas Gerlach, Maximilian Marx, Matthias Meißner, Simon Meusel, Markus Krötzsch
Nemo: First Glimpse of a New Rule Engine
In Proceedings of the 39th International Conference on Logic Programming, ICLP 2023, Open Publishing Association, 333-335, 2023. Open Publishing Association. 10.4204/EPTCS.385.35
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Xiaofeng Jiang, Hengyu Zhao, Oliver Lester Saldanha, Sven Nebelung, Christiane K. Kuhl, Iakovos Amygdalos, Sven Arke Lang, Xiaojian Wu, Xiaochun Meng, Daniel Truhn, Jakob Nikolas Kather, Jia Ke
An MRI Deep Learning Model Predicts Outcome in Rectal Cancer
In Radiology, Radiological Society of North America Inc., volume 307, 2023. Radiological Society of North America Inc.. 10.1148/radiol.222223
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Firas Khader, Gustav Anton Muller-Franzes, Soroosh Tayebi Arasteh, Tianyu Han, Christoph Haarburger, Maximilian Franz Schulze-Hagen, Philipp Schad, Sandy Engelhardt, Bettina Baeßler, Sebastian Foersch, Johannes Stegmaier, Christiane K. Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Denoising diffusion probabilistic models for 3D medical image generation
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-34341-2
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Konstantin Klemm, Anita Mehta, Peter F Stadler
Optimisation via encodings: a renormalisation group perspective
In Journal of Physics A: Mathematical and Theoretical, Institute of Physics, volume 56, 2023. Institute of Physics. 10.1088/1751-8121/ad07c9
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Jens Lehmann, Preetam Gattogi, Dhananjay Bhandiwad, Sébastien Ferré, Sahar Vahdati
Language Models as Controlled Natural Language Semantic Parsers for Knowledge Graph Question Answering
In Proceedings of the 26th European Conference on Artificial Intelligence, ECAI 2023, IOS Press BV, 1348-1356, 2023. IOS Press BV. 10.3233/FAIA230411
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Fabian Liessmann, Georg Künze, Jens Meiler
Improving the Modeling of Extracellular Ligand Binding Pockets in RosettaGPCR for Conformational Selection
In International Journal of Molecular Sciences, Multidisciplinary Digital Publishing Institute (MDPI), volume 24, 2023. Multidisciplinary Digital Publishing Institute (MDPI). 10.3390/ijms24097788
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Carsten Lutz, Lukas Schulze
Description Logics with Abstraction and Refinement
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 492-501, 2023. AAAI.
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Carsten Lutz, Quentin Maniere, Robin Nolte
Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 36th International Workshop on Description Logics, DL 2023, CEUR-WS, 2023. CEUR-WS.
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Carsten Lutz, Quentin Maniere, Robin Nolte
Querying Circumscribed Description Logic Knowledge Bases
In Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, KR 2023, AAAI, 482-491, 2023. AAAI.
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Kortney Melancon, Palina Pliushcheuskaya, Jens Meiler, Georg Künze
Targeting ion channels with ultra-large library screening for hit discovery
In Frontiers in Molecular Neuroscience, Frontiers Media SA, volume 16, 2023. Frontiers Media SA. 10.3389/fnmol.2023.1336004
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Johannes Müller, Guido Montúfar
Geometry and convergence of natural policy gradient methods
In Information Geometry, Springer, volume 7, 485-523, 2023. Springer. 10.1007/s41884-023-00106-z
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Evelyn Muschter, Jonas Schulz, Máté Tömösközi, Leonie Herbst, Lena Küssel, Merve Sefunç, Stefan Holtzhausen, Stefanie Speidel, Frank H. P. Fitzek, S. C. Li
Coming in handy: CeTI-Age — A comprehensive database of kinematic hand movements across the lifespan
In Scientific Data, Nature Research, volume 10, 2023. Nature Research. 10.1038/s41597-023-02738-3
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Hannah Sophie Muti, Christoph Röcken, Hans Michael Behrens, Chiara Maria Lavinia Löffler, Nic Gabriel Reitsam, Bianca Grosser, Bruno Märkl, Daniel E. Stange, Xiaofeng Jiang, Gregory P. Veldhuizen, Daniel Truhn, Matthias P. Ebert, Heike Irmgard Grabsch, Jakob Nikolas Kather
Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology: a retrospective multicentric study
In European Journal of Cancer, Elsevier Ltd, volume 194, 2023. Elsevier Ltd. 10.1016/j.ejca.2023.113335
Intelligent Medical Devices Journal Publication
Jan Moritz Niehues, Philip Quirke, Nicholas Paul West, Heike Irmgard Grabsch, Marko van Treeck, Yoni Schirris, Gregory P. Veldhuizen, Gordon G.A. Hutchins, Susan D. Richman, Sebastian Foersch, Titus Josef Brinker, Junya Fukuoka, Andrey V. Bychkov, Wataru Uegami, Daniel Truhn, Hermann Brenner, Alexander Brobeil, Michael Hoffmeister, Jakob Nikolas Kather
Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study
In Cell Reports Medicine, Cell Press, volume 4, 2023. Cell Press. 10.1016/j.xcrm.2023.100980
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Raquel Perez-Lopez, Jorge Sérgio Reis-Filho, Jakob Nikolas Kather
A framework for artificial intelligence in cancer research and precision oncology
In npj Precision Oncology, Nature Research, volume 7, 2023. Nature Research. 10.1038/s41698-023-00383-y
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Jorge Sérgio Reis-Filho, Jakob Nikolas Kather
Overcoming the challenges to implementation of artificial intelligence in pathology
In Journal of the National Cancer Institute, Oxford University Press, volume 115, 608-612, 2023. Oxford University Press. 10.1093/jnci/djad048
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Oliver Lester Saldanha, Hannah Sophie Muti, Heike Irmgard Grabsch, Rupert Langer, Bastian Dislich, Meike Kohlruss, Gisela Keller, Marko van Treeck, Katherine Jane Hewitt, Fiona R. Kolbinger, Gregory P. Veldhuizen, Peter Boor, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning
In Gastric Cancer, Springer, volume 26, 264-274, 2023. Springer. 10.1007/s10120-022-01347-0
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Stephanie Schiedermair
Il diritto all’oblio tra Lussemburgo, Strasburgo, Karlsruhe e il mondo intero
In Rivista di studia documentazione sull´integrazione europea 2/2023, numero speciale, , 2023.
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Datenschutzdurchführungsgesetz Sachsen
In Datenschutzdurchführungsgesetz Sachsen, 2023. Schiedermair (Hrsg.).
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Kommentierungen von Art. 4 (26), 50, 68-76, 92, 93, 96, 97
In General Data Protection Regulation, 2023. Spiecker gen. Döhmann/Papakonstantinou/Hornung/de Hert (eds.).
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Kommentierungen von §§ 1, 2
In Datenschutzdurchführungsgesetz Sachsen, 2023. Schiedermair (Hrsg.).
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El derecho al olvido en Luxemburgo, Estrasburgo, Karlsruhe y el mundo
In Derechos Fundmamentales y Democracia en el Constitucionalismo Digital, Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.), 587-607, 2023. Francisco Balaguer Callejon/Ingo Wolfgang Sarlet/Carlos Luiz Strapazzon/Ilton Robl Filho/Augusto Aguilar Calahorro/Antonio Pérez Miras (ed.).
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Stephanie Schiedermair, Johannes Weil
Zwischen Effizienz und Kontrollverlust: Der Einsatz von Künstlicher Intelligenz durch die Verwaltung im Spiegel des Rechts
In Quo Vadis Künstliche Intelligenz in der nuklearen Entsorgung?, Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.), 18-22, 2023. Bundesamt für die Sicherheit der nuklearen Entsorgung (Hrsg.).
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Carolin Schimmelpfennig, Michael Rade, Susanne Fuessel, Dennis Löffler, Conny Blumert, Catharina Bertram, Angelika Borkowetz, Dominik J. Otto, Sven Holger Puppel, Pia V. Hönscheid, Ulrich Sommer, Gustavo Bruno Baretton, Ulrike Koehl, Manfred P. Wirth, Christian Thomas, Friedemann Hörn, Markus Kreuz, Kristin Reiche
Characterization and evaluation of gene fusions as a measure of genetic instability and disease prognosis in prostate cancer
In BMC Cancer, BioMed Central Ltd, volume 23, 2023. BioMed Central Ltd. 10.1186/s12885-023-11019-6
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Tobias Schüler, Stephan Mennicke, Malte Lochau
Abstract Domains for Database Manipulating Processes
In Proceedings of the 7th International Joint Conference on Rules and Reasoning, RuleML+RR 2023, Springer, 222-237, 2023. Springer. 10.1007/978-3-031-45072-3_16
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Tobias Paul Seraphin, Mark Luedde, Christoph Roderburg, Marko van Treeck, Pascal Scheider, Roman David Bülow, Peter Boor, Sven Heiko Loosen, Zdenek Provaznik, Daniel H. Mendelsohn, Filip Berisha, Christina Magnussen, Dirk Westermann, Tom Luedde, Christoph Brochhausen, Samuel T. Sossalla, Jakob Nikolas Kather
Prediction of heart transplant rejection from routine pathology slides with self-supervised deep learning
In European Heart Journal - Digital Health, Oxford University Press, volume 4, 265-274, 2023. Oxford University Press. 10.1093/ehjdh/ztad016
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Soroosh Tayebi Arasteh, Peter P. Isfort, Marwin Jonathan Saehn, Gustav A. Mueller-Franzes, Firas Khader, Jakob Nikolas Kather, Christiane K. Kuhl, Sven Nebelung, Daniel Truhn
Collaborative training of medical artificial intelligence models with non-uniform labels
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-33303-y
Intelligent Medical Devices Journal Publication
Balder Ten Cate, Maurice Funk, Jean Christoph Jung, Carsten Lutz
SAT-Based PAC Learning of Description Logic Concepts
In Proceedings of the 32nd International Joint Conference on Artificial Intelligence, IJCAI 2023, International Joint Conferences on Artificial Intelligence, 3347-3355, 2023. International Joint Conferences on Artificial Intelligence. 10.24963/ijcai.2023/373
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A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports
In Scientific Reports, Nature Research, volume 13, 2023. Nature Research. 10.1038/s41598-023-47500-2
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Gregory P. Veldhuizen, Christoph Röcken, Hans Michael Behrens, Didem Cifci, Hannah Sophie Muti, Takaki Yoshikawa, Tomio Arai, Takashi Oshima, Patrick Boon Ooi Tan, Matthias P. Ebert, Alexander T. Pearson, Julien Calderaro, Heike Irmgard Grabsch, Jakob Nikolas Kather
Deep learning-based subtyping of gastric cancer histology predicts clinical outcome: a multi-institutional retrospective study
In Gastric Cancer, Springer, volume 26, 708-720, 2023. Springer. 10.1007/s10120-023-01398-x
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Denny Vrandečič, Lydia Pintscher, Markus Krötzsch
Wikidata: The Making Of
In Proceedings of the 32nd Companion of the ACM World Wide Web Conference, WWW 2023, ACM, 615-624, 2023. ACM. 10.1145/3543873.3585579
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Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study
In Cancer Cell, Cell Press, volume 41, 1650-1661.e4, 2023. Cell Press. 10.1016/j.ccell.2023.08.002
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Martin Bogdan
Learning algorithms for spiking neural networks: should one use learning algorithms from ANN/DL or neurological plausible learning? - A thought-provoking impulse
In XLIII Jornadas de Automática: libro de actas, Universidade da Coruña. Servizo de Publicacións, 201-207, 2022. Universidade da Coruña. Servizo de Publicacións. 10.17979/spudc.9788497498418.0201
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Grover Enrique Castro Guzman, Peter F Stadler, Andre Fujita
Efficient eigenvalue counts for tree-like networks
In Journal of Complex Networks, Oxford University Press, volume 10, 2022. Oxford University Press. 10.1093/comnet/cnac040
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Ali Elhalawati, Markus Krötzsch, Stephan Mennicke
An Existential Rule Framework for Computing Why-Provenance On-Demand for Datalog
In Proceedings of the 6th International Joint Conference on Rules and Reasoning, RuleML+RR 2022, Springer, 146-163, 2022. Springer. 10.1007/978-3-031-21541-4_10
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Efficient Dependency Analysis for Rule-Based Ontologies
In Proceedings of the 21st International Semantic Web Conference, ISWC 2022, Springer, 267-283, 2022. Springer. 10.1007/978-3-031-19433-7_16
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Maximilian Marx, Markus Krötzsch
Tuple-Generating Dependencies Capture Complex Values
In Proceedings of the 4th International Workshop on the Resurgence of Datalog in Academia and Industry, Datalog-2.0 2022, CEUR-WS, 97-103, 2022. CEUR-WS.
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Stephanie Schiedermair, Johannes Weil
Online-Intermediäre als Träger der Meinungsfreiheit
In DÖV, , 2022.
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Stephanie Schiedermair, Mark Cole, Eva Wagner
Das Phänomen der fake news im Spiegel der Judikatur des EGMR
In Die Entfaltung von Freiheit im Rahmen des Rechts, Festschrift für Dieter Dörr zum 70. Geburtstag, 2022.
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